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ProteomicsLC-MSMS of RIBOPROTEOMES OF HEALTHY, POTATO VIRUS A- AND AGROBACTERIUM -INFECTED NICOTIANA BENTHAMIANA PLANTS
Nicotiana benthamiana is an important model plant for plant-microbe interaction studies. We compared the proteomes of ribosomes purified from healthy N. benthamiana plants and plants that were infected with two plant pathogens potato virus A (PVA genus Potyvirus) and A. tumefaciens bacteria. Ribosom...
ORGANISM(S): Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) Nicotiana benthamiana Potato virus A 
2018-12-05 | PXD011602 | Pride
Lc-msms Ribosome Agrobacterium tumefaciens Healthy plants Potato virus a Plant Nicotiana benthamiana 
ProteomicsIdentification and quantification of allele specific proteins and homeolog expression bias in an allopolyploid non-model crop by integrating transcriptomics and proteomics.
The fate of doubled genes, from allopolyploid or autopolyploid origin, is controlled at multiple levels within the central dogma: gene loss or silencing, neo- and/or sub functionalization, inter genomic transfer, allele dominance/co-dominance, differences in transcription/translation efficiency, pos...
ORGANISM(S): Musa acuminata subsp. malaccensis 
2018-01-29 | PXD006375 | Pride
Integration transcriptomics and proteomics Allele specificity Musa acuminata Non-model crop 
TranscriptomicsAcute effects of light on alternative splicing in light-grown plants
We report the results of a genome-wide analysis of AS in Arabidopsis thaliana plants exposed to a 2h light pulse given in the middle of the night, a treatment that simulates the effects of early dawn or late dusk signals. This light affects the plant transcriptome at multiple regulatory layers, and...
ORGANISM(S): Arabidopsis thaliana 
2016-08-09 | E-GEOD-68560 | biostudies-arrayexpress
TranscriptomicsMicroarray analysis for leaves of Arabidopsis thaliana Col-0 plants fumigated with nitrogen dioxide (treatment) or air (control)
Four-week-old Arabidopsis thaliana (Col-0) plants were fumigated for 1 h with 10 parts per million (ppm) nitrogen dioxide (NO2) to analyse leaf transcriptome changes induced by this air pollutant relative to air-fumigated control plants.
ORGANISM(S): Arabidopsis thaliana 
2018-08-10 | E-MTAB-6522 | biostudies-arrayexpress
TranscriptomicsHeterologous microarrays for the study of drought stress in Musa
'Systems-wide' approaches such as microarray RNA-profiling are ideally suited to the study of the complex, overlapping responses of plants to biotic and abiotic stresses. However, commercial microarrays are only available for a limited number of plant species and development costs are so substantial...
ORGANISM(S): Musa sp. 
2009-07-04 | E-GEOD-16865 | biostudies-arrayexpress
ProteomicsA YTHDF-PABP axis is required for m6A-mediated organogenesis in plants
N6-methyladenosine (m6A) in mRNA is key to eukaryotic gene regulation. Many m6A functions involve RNA-binding proteins that recognize m6A via a YT521-B Homology (YTH) domain. YTH domain proteins contain long intrinsically disordered regions (IDRs) that may mediate phase separation and interaction wi...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2023-11-28 | PXD045801 | Pride
Arabidopsis Plants M6a Ect2 
TranscriptomicsTranscription profiling of Arabidopsis wild type, 35S:mks1 and mpk4 plants
In plants, MAPKs are implicated in signalling cascades regulating immediate as well as systemic responses to pathogens. Arabidopsis MAP kinase 4 (MPK4) negatively regulates systemic acquired resistance (SAR) accompanied by the expression of pathogenesis-related (PR) genes. MPK4 interacts with and ph...
ORGANISM(S): Arabidopsis thaliana 
2005-09-01 | E-MEXP-173 | biostudies-arrayexpress
TranscriptomicsSystems Biology approach to identify transcriptome reprogramming in Arabidopsis thaliana during insect and bacterial attack (Brevicoryne brassicae)
We have implemented an integrated Systems Biology approach to analyze overall transcriptomic reprogramming and systems level defense responses in the model plant Arabidopsis thaliana during an insect (Brevicoryne brassicae) and a bacterial (Pseudomonas syringae pv. tomato strain DC3000) attack. The ...
ORGANISM(S): Arabidopsis thaliana 
2013-06-01 | E-GEOD-39245 | biostudies-arrayexpress
UnknownHarnessing Current Knowledge of DNA N6-Methyladenosine From Model Plants for Non-model Crops.
Not available
S-EPMC8118384 | biostudies-literature
TranscriptomicsExpression data for drought-, cold, high-salinity and ABA treatment in Arabidopsis plants
We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome under drought, cold, high-salinity and ABA treatment conditions and idenfied many stress- or ABA- responsive putative functional RNAs and fully-overlapping sense-antisense transcripts in Arabidopsis genome. Keywords: st...
ORGANISM(S): Arabidopsis thaliana 
2008-11-19 | E-GEOD-9646 | biostudies-arrayexpress
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