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TranscriptomicsTranscription profiling and cross species hybridization of Sordaria macrosopora samples undergoing sexual development (wt.sex), wild type growing vegetatively (wt.veg), and mutant strains pro1, pro41, and pro1/41 on Neurospora crassa arrays
Cross-species hybridizations of Sordaria macrospora targets on Neurospora crassa microarrays were performed with targets derived from the S. macrospora wild type undergoing sexual development (wt.sex), the wild type growing vegetatively (wt.veg), and the mutant strains pro1, pro41, and pro1/41 (pro1...
ORGANISM(S): Sordaria macrospora 
2007-05-09 | E-MEXP-915 | biostudies-arrayexpress
ProteomicsProxiomes of the greenbeard proteins SmDOC1 and SmDOC2 in the filamentous fungus Sordaria macrospora
In this study, we used the in vivo proximity labeling biotin identification (BioID; Roux et al., 2012) method to capture proteins of the microenvironment of the greenbeard determinant of communication (DOC) proteins SmDOC1 and SmDOC2 in the filamentous fungus Sordaria macrospora. The genes Smdoc1 (S...
ORGANISM(S): Sordaria macrospora 
2026-08-19 | PXD069539 | Pride
Sordaria macrospora Turboid Proximity labeling Bioid Determinant of communication 
TranscriptomicsCombining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development
RNA-seq analysis of developmental stages from the filamenous ascomycete Sordaria macrospora. Using laser capture microdissection, we separated protoperithecia (young fruiting bodies) from the surrounding hyphae. RNA isolation and amplification from 150 protoperithecia yields enough material for RNA-...
ORGANISM(S): Sordaria macrospora 
2012-10-01 | E-GEOD-33668 | biostudies-arrayexpress
ProteomicsProximity labeling of the SmSTRIPAK complex in Sordaria macrospora using the SCI1 subunit as bait to identify its SmSTRIPAK-dependent microenvironment
In this study, we used the in vivo proximity labeling biotin identification (BioID; Roux et al., 2012) method to capture proteins of the microenvironment of the striatin interacting kinase and phosphatase complex of the filamentous fungus Sordaria macrospora (SmSTRIPAK). For that, the TurboID biotin...
ORGANISM(S): Sordaria macrospora 
2026-08-19 | PXD069198 | Pride
Sordaria macrospora Turboid Stripak Proximity labeling Bioid 
UnknownEssential genes encoded by the mating-type locus of the human fungal pathogen <i>Cryptococcus neoformans</i>.
Not available
S-EPMC11642766 | biostudies-literature
UnknownEssential genes encoded by the mating-type locus of the human fungal pathogen <i>Cryptococcus neoformans</i>.
Not available
S-EPMC11980393 | biostudies-literature
TranscriptomicsThe LysR-type transcriptional regulator VtlR/LsrB controls expression of multiple small RNA and small protein genes in Agrobacterium tumefaciens
We investigated the role of the LysR-type transcriptional regulator VtlR/LsrB (Atu2186) from Agrobacterium tumefaciens C58 (alias A. fabrum C58), which regulates the expression of small-regulatory-RNA (sRNA) genes such as AbcR1 and the expression of genes encoding small proteins with a domain of unk...
ORGANISM(S): Agrobacterium fabrum str. C58 
2020-10-24 | GSE159961 | GEO
UnknownComplete Mitochondrial Genome Sequence of the Pezizomycete Pyronema confluens.
Not available
S-EPMC4866847 | biostudies-literature
UnknownFungal gene expression levels do not display a common mode of distribution.
Not available
S-EPMC3877863 | biostudies-literature
TranscriptomicsTranscriptome analysis of a Sordaria macrospora nox1 mutant
The Sordaria macrospora nox1 mutant has a block in sexual development at the stage of protoperithecia formation, and therefore is sterile. The aim of this study was to determine the transcriptome of microdissected protoperithecia from the mutant, as well as the transcriptomes of total RNA from the m...
ORGANISM(S): Sordaria macrospora 
2014-03-10 | E-GEOD-49363 | biostudies-arrayexpress
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