O'Neill J J - OmicsDI

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Unknown (1487)
Transcriptomics (26)
Proteomics (25)
Metabolomics (12)
Models (1)

Organisms

Chlamydomonas reinhardtii (25)
Pseudomonas canadensis (25)
Human alphaherpesvirus 1 strain 17 (25)
Marchantia polymorpha subsp. ruderalis (25)
Methylocystis sp. (25)
Exiguobacterium sp. SH31 (25)
Porites pukoensis (25)
Porphyromonas gingivalis W83 (25)
Bothrops insularis (25)
Bothrops jararaca (25)
Bothrops jararacussu (25)
Bothrops cotiara (25)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (25)
Dinosauria (25)
Pseudomonas [fluorescens] SBW25 (25)
Trypanosoma vivax Y486 (25)
Streptomyces coelicolor (25)
Aves (25)
Pseudomonas taiwanensis (25)
Burkholderia ubonensis MSMB22 (25)
Pseudomonas aeruginosa PA103 (25)
Artibeus jamaicensis (25)
Morchella importuna (25)
Clostridium autoethanogenum (25)
Human alphaherpesvirus 1 strain KOS (25)
Mus musculus (12)
Homo sapiens (7)
Rattus norvegicus (5)
Bos taurus (2)
Ostreococcus tauri (1)

Repository

biostudies-arrayexpress (26)
pride (25)
MetaboLights (10)
GNPS (2)
BioModels (1)

Tissue

Cell culture (6)
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Esophagus squamous epithelium (1)
Primary cell line (1)
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Cerebral cortex pyramidal neuron (1)
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Venom (1)
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Lung (1)
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Brain (1)
Embryo (1)
Whole body (1)
Macrophage (1)

Disease

Gastroesophageal adenocarcinoma (1)
Esophageal cancer (1)
Brain glioblastoma multiforme (1)
Pancreatic ductal adenocarcinoma (1)
Breast cancer (1)
Disease free (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (16)
Mass spectrometry (8)
Bottom-up proteomics (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (2)
Gel-based experiment (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - hilic (2)
LTQ FT (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
MaXis (1)
Liquid Chromatography MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2013 (16)
2023 (7)
2019 (6)
2015 (5)
2021 (5)
2024 (3)
2012 (3)
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2008 (2)
2007 (2)
2022 (2)
2020 (2)
2014 (1)
2010 (1)
2009 (1)
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2018 (1)
2016 (1)
2011 (1)

UNIPROT ID/AC

P92973 (1)
Q9LKL2 (1)

CHEBI ID

CHEBI:35038 (3)
CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:195271 (2)
CHEBI:143757 (2)
CHEBI:182784 (2)
CHEBI:143745 (2)
CHEBI:139138 (2)
CHEBI:16077 (2)
CHEBI:34494 (2)
CHEBI:73858 (2)
CHEBI:173703 (2)
CHEBI:34687 (2)
CHEBI:4167 (2)
CHEBI:64563 (2)
CHEBI:27432 (2)
CHEBI:15603 (2)
CHEBI:48928 (2)
CHEBI:422 (2)
CHEBI:80774 (2)
CHEBI:16708 (2)
CHEBI:17561 (2)
CHEBI:17895 (2)
CHEBI:30797 (2)
CHEBI:17138 (2)
CHEBI:75342 (2)
CHEBI:17191 (2)
CHEBI:25078 (1)
CHEBI:33699 (1)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
Dibutyl phthalate (DBP) (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
Lyso-PC(16:0) (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Monoolein (2)
Succinate (2)
Valine (2)
Methionine (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
9(10)-EpOME (2)
Taurocholic acid (2)
Elaidic acid (2)
NADP+ (2)
NAD+ (2)
Threonine (2)
Phenylalanine (2)
Isoleucine (2)
Citric acid (2)
NADPH (2)
NADH (2)
Leucine (2)
ATP (2)
AMP (2)
ADP (2)
NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (20)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Animal - One-color microarray (1)
Other (1)
RNA-seq of coding RNA (1)

Release Date

2023 (158)
2021 (155)
2025 (153)
2022 (150)
2024 (147)
2020 (136)
2018 (101)
2019 (100)
2016 (67)
2017 (60)
2015 (58)
2014 (46)
2013 (45)
2012 (30)
2011 (25)
2026 (21)
2009 (20)
2008 (12)
2007 (9)
2010 (8)
2005 (3)
2003 (3)
2006 (2)
2004 (2)
2000 (1)
1999 (1)

Lab affiliation

SynthSys – Synthetic and Systems Biology (3)
Dept. of Oncology, University of Oxford, Oxford, OX3 7DQ, UK (1)
National Institute for Cellular Biotechnology, Dublin City University (1)
Professor in Infectious Diseases School of Biological Sciences Medical Biology Centre (MBC) Queen's University Belfast Belfast UK (1)
Professor of Cell Biology & Parasitology Wellcome Centre for Anti-Infectives Research Division of Biological Chemistry & Drug Discovery School of Life Sciences University of Dundee Dundee DD1 5EH United Kingdom (1)
MRC-Laboratory of Molecular Biology Cell Biology Division (1)
Proteomics Unit, Max Planck Institute of Immunobiology and Epigenetics (1)
International Center for Cancer Vaccine Science (ICCVS), University of Gdansk, Gdansk, Poland (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
MRC Laboratory of Molecular Biology, Cell Biology Division (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Institute of Genetics and Cancer (IGC), University of Edinburgh, Edinburgh, Scotland (1)
Department of Oncology, University of Oxford, Oxford, Oxfordshire, OX3 7DQ, UK (1)
Caris Science Inc (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar Technical University of Munich (1)
Trinity College Dublin, Ireland (1)
Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (1)
Department of Zoology, School of Natural Sciences, National University of Ireland, Galway. (1)
MD, PhD, DSc Head of laboratory of Molecular microbial genetics Research Institute of Physical-Chemical ( lab head ) (1)
Division of Oncology and Pathology, Dept. of Clinical Sciences Lund, Lund University, Lund, Sweden (1)
Departmento de Bioquíimica y Biologíia Molecular, Universitat de Valèencia, Burjassot, Valencia, Spain (1)
University of Oxford (1)
Department of Physiological Genomics, Biomedical Center, Ludwig-Maximilians University, Germany (1)

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In vivo transposition mediated by V(D)J recombinase in human T lymphocytes.

Not available

S-EPMC151080 | biostudies-literature

Transcription profiling of human CD133+ immature blasts from patients with AML/RAEB

CD133-positive immature blasts were purified from bone marrow of the patients. Total RNA was extracted by RNeasy mini spin column (Qiagen, Inc). SUBMITTER_CITATION: Yamashita Y, Ohashi J, Hirai Y, Choi YL, Kaneda R, Fujiwara S-i, Arai Y, Akutsu M, Tsutsumi C, Miyazaki Y, Usuki K, Teramura M, Mitani ...

ORGANISM(S): Homo sapiens

2008-06-12 | E-GEOD-1427 | biostudies-arrayexpress

Mutagenesis mapping of the protein-protein interaction underlying FusB-type fusidic acid resistance.

Not available

S-EPMC3811445 | biostudies-literature

Estrogen receptor α is required for oviductal transport of embryos.

Not available

S-EPMC5349796 | biostudies-literature

Macrophage ATP citrate lyase deficiency stabilizes atherosclerotic plaques

Macrophages represent a major immune cell population in atherosclerotic plaques and play central role in the progression of this lipid-driven chronic inflammatory disease. Targeting immunometabolism is proposed as a strategy to revert aberrant macrophage activation to improve disease outcome. Here, ...

2021-03-05 | MTBLS2159 | MetaboLights

Troein2011_ClockCircuit_OstreococcusTauri

This model is from the article: Multiple light inputs to a simple clock circuit allow complex biological rhythms Troein C, Corellou F, Dixon LE, van Ooijen G, O'Neill JS, Bouget FY, Millar AJ. Plant J.2011 Apr;66(2):375-85. 21219507, Abstract: ...

2024-09-02 | BIOMD0000000350 | BioModels

Aberrant accumulation of cyclin D1 rewires glutamine metabolism via loss of IDH3 generating metabolic vulnerability in ESCC and HNSCC

Excessive cyclin D1 accumulation is a frequent oncogenic event in head and neck squamous cell carcinoma (HNSCC) and esophageal squamous cell carcinoma (ESCC). Although classically associated with enhanced proliferation and genomic instability, we reveal that cyclin D1 dysregulation induces unexpe...

2026-08-24 | MTBLS13687 | MetaboLights

Higher glutamatergic activity in the medial prefrontal cortex in chronic ketamine users.

Not available

S-EPMC9343127 | biostudies-literature

Double-Blind Phase III Trial of Adjuvant Chemotherapy With and Without Bevacizumab in Patients With Lymph Node-Positive and High-Risk Lymph Node-Negative Breast Cancer (E5103).

Not available

S-EPMC6118403 | biostudies-literature

Mitochondrial Membrane Potential Regulates Nuclear Gene Expression in Macrophages Exposed to PGE2

Metabolic engagement is intrinsic to immune cell function. Prostaglandin E2 (PGE2) has been shown to modulate macrophage activation, yet how PGE2 might affect metabolism is unclear. Here we show that PGE2 causes mitochondrial membrane potential (Δψm) to dissipate in interleukin-4 activated macrophag...

ORGANISM(S): Mus musculus (Mouse)

2021-09-08 | PXD010997 | Pride

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