O'Sullivan E E - OmicsDI

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Transcriptomics (15)
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Homo sapiens (9)
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Escherichia coli str. K-12 substr. MG1655 (1)

Repository

biostudies-arrayexpress (15)
pride (9)
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Tissue

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Disease

Not Available (1)
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Technology Type

Mass Spectrometry (9)
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Bottom-up proteomics (3)
Illumina HiSeq 2000 (1)
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Data-dependent acquisition (1)

Instrument Platform

Illumina HiSeq 4000 (1)
Instrument (1)
TSQ Quantiva (1)
Q Exactive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2026 (4)
2018 (3)
2015 (3)
2013 (3)
2024 (3)
2020 (2)
2012 (2)
2014 (1)
2011 (1)
2008 (1)
2007 (1)
2016 (1)
2022 (1)
2021 (1)
2023 (1)

CHEBI ID

CHEBI:17754 (2)
CHEBI:27266 (2)
CHEBI:25017 (2)
CHEBI:26271 (2)
CHEBI:28300 (2)
CHEBI:16449 (2)
CHEBI:25094 (2)
CHEBI:22653 (2)
CHEBI:18186 (2)
CHEBI:15356 (2)
CHEBI:17822 (2)
CHEBI:16709 (2)
CHEBI:28044 (2)
CHEBI:16811 (2)
CHEBI:16704 (2)
CHEBI:18257 (2)
CHEBI:15428 (2)
CHEBI:18211 (2)
CHEBI:16958 (2)
CHEBI:27389 (2)
CHEBI:27897 (2)
CHEBI:46924 (1)
CHEBI:75568 (1)
CHEBI:30854 (1)
CHEBI:17544 (1)
CHEBI:82635 (1)
CHEBI:58045 (1)
CHEBI:144043 (1)
CHEBI:43983 (1)
CHEBI:86347 (1)

Metabolite Name

ST 24:1;O3;S (1)
SMGDG O-37:2|SMGDG O-19:0_18:2 (1)
SMGDG 37:3 (1)
SM 42:2;O2|SM 18:1;O2/24:1 (1)
SM 36:2;O2(d9)|SM 18:1;O2/18:1(d9) (1)
SM 35:1;O2|SM 16:0;O2/19:1 (1)
SM 34:0;O2|SM 18:0;O2/16:0 (1)
SM 32:2;O2|SM 22:2;O2/10:0 (1)
SM 32:1;O2|SM 16:1;O2/16:0 (1)
SL 37:7;O2|SL 17:2;O/20:5;O (1)
PS 33:1(d7)|PS 15:0_18:1(d7) (1)
PI 35:5;O|PI 20:4_15:1;O (1)
PI 35:3;O|PI 18:2_17:1;O (1)
PI 35:2|PI 17:0_18:2 (1)
PI 34:1|PI 16:0_18:1 (1)
PI 33:1(d7)|PI 15:0_18:1(d7) (1)
PI 32:1|PI 16:0_16:1 (1)
PI 32:0|PI 16:0_16:0 (1)
PG 33:1(d7)|PG 15:0_18:1(d7) (1)
PE O-40:7|PE O-18:1_22:6 (1)
PE O-40:5|PE O-20:1_20:4 (1)
PE O-38:7|PE O-18:3_20:4 (1)
PE O-38:6|PE O-18:2_20:4 (1)
PE O-36:6|PE O-16:1_20:5 (1)
PE O-36:4|PE O-16:0_20:4 (1)
PE O-36:2|PE O-18:1_18:1 (1)
PE O-35:5|PE O-15:1_20:4 (1)
PE 42:8;O|PE 20:4_22:4;O (1)
PE 38:6;O|PE 20:5_18:1;O (1)
PE 37:4|PE 17:0_20:4 (1)

Study type

Transcription profiling by array (10)
Other (2)
RNA-seq of coding RNA (2)
Methylation profiling by array (1)

Release Date

2023 (98)
2021 (92)
2022 (91)
2025 (75)
2024 (75)
2020 (59)
2019 (41)
2015 (38)
2016 (33)
2017 (29)
2013 (26)
2018 (24)
2014 (23)
2012 (19)
2011 (17)
2026 (12)
2008 (9)
2010 (6)
2009 (6)
2007 (3)
2006 (3)
2004 (1)

Lab affiliation

The University of Melbourne (2)
Department of Radiation Oncology, School of Medicine and the Winship Cancer Institute, Emory University (1)
Charles Perkins Centre and School of Medical Sciences, University of Sydney, Australia (1)
Professor School of Biomolecular and Biomedical Science, University College Dublin, School of Biomolecular and Biomedical Science, Conway Institute Belfield Dublin 4 (1)
Department of Dermatology and Venereology, University of Cologne, Faculty of Medicine, and University Hospital of Cologne; Cologne, Germany Max Planck Institute for Immunobiology and Epigenetics; Freiburg, Germany. Center of Molecular Medicine Cologne (CMMC), University of Cologne; Cologne, Germany. (1)
The University of Texas at Austin (1)
Institute for Systems Biology (1)
Novo Nordisk Foundation Center for Protein Research, Department of Cellular and Molecular Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark. (1)

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Global spatial organization of M-NM-3 proteobacterial nucleoids is determined by specific long-range interactions (E. coli)

GCC was used to determine the structure of E. coli grown in LB or treated with SHX. The bacterial genome is highly condensed into a nucleoid structure. Here we present global analyses of the genome spatial organization for two M-NM-3-proteobacteria: Escherichia coli and Pseudomonas aeruginosa by Ge...

ORGANISM(S): Escherichia coli

2013-05-02 | E-GEOD-40603 | biostudies-arrayexpress

Vitamin E Acetate in Bronchoalveolar-Lavage Fluid Associated with EVALI.

Not available

S-EPMC7032996 | biostudies-literature

Dietary and supplemental intake of vitamins C and E is associated with altered DNA methylation in an epigenome-wide association study meta-analysis.

Not available

S-EPMC10228397 | biostudies-literature

Impact of the COVID-19 pandemic on cancer diagnoses, stage and survival in Alberta.

Not available

S-EPMC10260240 | biostudies-literature

Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription

To fit within the confines of the cell, bacterial chromosomes are highly condensed into a structure called the nucleoid. Despite the high degree of compaction in the nucleoid, the genome remains accessible to essential biological processes, such as replication and transcription. Here, we present the...

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2013-05-01 | E-GEOD-40304 | biostudies-arrayexpress

Corneal Gene Expression Analysis

Transplantation of amniotic membrane-expanded limbal epithelium (AMLE) in place of donor tissue grafts results in significantly improved outcomes for patients suffering from severe limbal stem cell deficiency; however the reasons for such superior results are unclear. The purpose of this study was t...

ORGANISM(S): Homo sapiens

2014-10-02 | E-GEOD-56421 | biostudies-arrayexpress

Global Chromatin Changes Resulting from Single-Gene Inactivation-The Role of SMARCB1 in Malignant Rhabdoid Tumor.

Not available

S-EPMC8197137 | biostudies-literature

Phylogenomic and Evolutionary Insights into Lipoprotein Lipase (LPL) Genes in Tambaqui: Gene Duplication, Tissue-Specific Expression and Physiological Implications.

Not available

S-EPMC12111056 | biostudies-literature

Chlamydophila pneumoniae PknD exhibits dual amino acid specificity and phosphorylates Cpn0712, a putative type III secretion YscD homolog.

Not available

S-EPMC2168749 | biostudies-literature

Electrochemical Detection of Single-Nucleotide Polymorphism Associated with Rifampicin Resistance in Mycobacterium tuberculosis Using Solid-Phase Primer Elongation with Ferrocene-Linked Redox-Labeled Nucleotides.