Ong K L KL - OmicsDI

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Unknown (231)
Transcriptomics (12)
Metabolomics (6)
Genomics (1)
Proteomics (1)

Organisms

Streptococcus pneumoniae (3)
Drosophila melanogaster (3)
Homo sapiens (3)
Escherichia coli str. K-12 substr. MG1655 (2)
Mus musculus (2)
Alphavirus (1)
Anemia (1)
Archaea (1)
Bacteria (1)
Betaherpesvirinae (1)
Borrelia (1)
Clostridium perfringens (1)
Cowpox virus (1)
Cytomegalovirus (1)
Dengue virus (1)
Hepatitis B virus (1)
Human alphaherpesvirus 1 (1)
Human betaherpesvirus 5 (1)
Human immunodeficiency virus (1)
Influenza A virus (1)
Influenza C virus (1)
Japanese encephalitis virus group (1)
Kamptonema sp. (1)
Listeria monocytogenes (1)
Mammarenavirus (1)
Miscanthus x giganteus (1)
Mus musculus (1)
Mycobacterium tuberculosis (1)
Rattus (1)
Sarbecovirus (1)

Repository

biostudies-arrayexpress (13)
MetaboLights (6)
pride (1)

Tissue

Cell culture (1)

Technology Type

Mass spectrometry (5)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Mass Spectrometry (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
GenePix Professional 4200A [Axon Instruments] (3)
NextSeq 550 (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (6)
2013 (5)
2008 (3)
2016 (1)
2015 (1)
2012 (1)
2010 (1)
2024 (1)
2017 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:35038 (3)
CHEBI:28865 (3)
CHEBI:195271 (2)
CHEBI:143757 (2)
CHEBI:182784 (2)
CHEBI:143745 (2)
CHEBI:139138 (2)
CHEBI:173703 (2)
CHEBI:27997 (2)
CHEBI:75342 (2)
CHEBI:73858 (2)
CHEBI:80774 (2)
CHEBI:64563 (2)
CHEBI:34687 (2)
CHEBI:34494 (2)
CHEBI:27432 (2)
CHEBI:181874 (1)
CHEBI:195266 (1)
CHEBI:195267 (1)
CHEBI:195269 (1)
CHEBI:75567 (1)
CHEBI:195270 (1)
CHEBI:195265 (1)
CHEBI:181094 (1)
CHEBI:195272 (1)
CHEBI:191103 (1)
CHEBI:181126 (1)
CHEBI:195264 (1)
CHEBI:25640 (1)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
Dibutyl phthalate (DBP) (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Monoolein (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
9(10)-EpOME (2)
NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)
Sodium taurochenodeoxycholate (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
3beta-Hydroxy-5-cholenoic acid (1)
Lyso PC (22:6) (1)
Methyl (3R,4R,5R)-5-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-3,4-dihydroxycyclohexene-1-carboxylate (1)
Propanoic acid, 3,3'-thiobis-, didodecyl ester (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
LU052302 Acetyl tributyl citrate|tributyl 2-acetyloxypropane-1,2,3-tricarboxylate (1)
Hexanedioic acid, bis(2-ethylhexyl) ester (1)
9-Octadecenamide, (Z)- (1)
Ethanol, 2-(2-butoxyethoxy)- (1)
2-((4R)-4-((3R,5R,6S,9S,10R,13R,14S,17R)-3,6-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
Diphenylphosphate|Diphenyl hydrogen phosphate (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (6)
ChIP-chip by tiling array (4)
RNA-seq of coding RNA (2)
ChIP-seq (1)

Release Date

2020 (28)
2013 (23)
2021 (21)
2018 (21)
2022 (17)
2015 (16)
2024 (16)
2023 (15)
2012 (13)
2016 (12)
2014 (12)
2025 (11)
2019 (11)
2017 (10)
2011 (9)
2010 (4)
2008 (4)
2009 (1)

Lab affiliation

Ludwig Institute for Cancer Research, University of California San Diego, CA. Moores Cancer Center, UCSD School of Medicine, La Jolla, CA. Department of Pathology, UCSD School of Medicine, La Jolla, CA (1)

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Chip-chip from Escherichia coli MG1655 K-12, WT and M-bM-^HM-^Ffnr strains

Mapping the occupancy of FNR, HNS, and IHF throughout the genome of Escherchia coli MG1655 K-12 using an affinity purified antibody under anerobic growth conditions. We also mapped the binding of the M-CM-^_ subunit of RNA Polymerase under both aerobic and anaerobic growth conditions. As a control, ...

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2013-06-20 | E-GEOD-41186 | biostudies-arrayexpress

Investigating the trivariate reciprocal longitudinal relationships between purpose, loneliness, and cognitive function.

Not available

S-EPMC12530885 | biostudies-literature

mTORC2 regulates amino acid metabolism in cancer by phosphorylation of the cystine-glutamate antiporter xCT

Mutations in cancer reprogram amino acid metabolism to drive tumor growth, but the molecular mechanisms are not well understood. Using an unbiased proteomic screen, we identified mTORC2 as a critical regulator of amino acid metabolism in cancer via phosphorylation of the cystine-glutamate antiporter...

ORGANISM(S): Homo sapiens (Human)

2017-06-28 | PXD006461 | Pride

Mtorc2 Xct

Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol) [NimbleGen Array data]

Drosophila Insulator proteins mediate long-range chromosomal interactions. ChIP-seq revealed that binding of insulator proteins to some specific DNA sites was regulated by poly(ADP-ribosyl)ation in S2 cells. Three insulator sites regulated by poly(ADP-ribosyl)ation were used as baits to map their di...

ORGANISM(S): Drosophila melanogaster

2013-09-15 | E-GEOD-50768 | biostudies-arrayexpress

Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol)

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Drosophila melanogaster

2013-09-15 | E-GEOD-50769 | biostudies-arrayexpress

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial C - blue mussel ensilage-dose response)

Testing the effect of blue mussel ensilage as a novel cost-efficient protein feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial C, alternative processi...

2023-06-13 | MTBLS4384 | MetaboLights

Clinical significance of incident hypokalemia and hyperkalemia in treated hypertensive patients in the antihypertensive and lipid-lowering treatment to prevent heart attack trial.

Not available

S-EPMC3373273 | biostudies-literature

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial D - fermented seaweed open water-dose response)

Testing the effect of seaweed as a novel cost-efficient feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial D, an alternative marine compound is include...

2023-06-13 | MTBLS6733 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial A - seaweed-dose response)

2023-06-13 | MTBLS4381 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial B - blue mussel-dose response)

An experimental trial was conducted on juvenile farmed Atlantic salmon (Salmo salar) in the framework of the HoloFood project, which aims to test the effect of novel sustainable feed additives in the feed of farmed salmon. Trial B blue mussel was used as a novel sustainable protein feed source in...

2023-06-13 | MTBLS4382 | MetaboLights

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