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TranscriptomicsRNA-seq for identifying semi-extractable and OOPS RNAs in naive and primed mouse embryonic stem cells
Total RNA-seq data from samples produced using conventional TRIzol RNA extraction (control), using the semi-extractability assay (PMID: 28404604) or Orthogonal Organic Phase Separation (OOPS; PMID: 30607034, PMID: 32651564) in naive mESCs (nPSCs), primed pluripotent stem cells (pPSCs) and 1-day Wnt-...
ORGANISM(S): Mus musculus 
2025-09-16 | E-MTAB-14762 | biostudies-arrayexpress
TranscriptomicsRNA-seq for identifying semi-extractable and OOPS RNAs in naive mouse embryonic stem cells (second batch)
Total RNA-seq data from samples produced using conventional TRIzol RNA extraction (control), using the semi-extractability assay (PMID: 28404604) or Orthogonal Organic Phase Separation (OOPS; PMID: 30607034, PMID: 32651564) in naive mESCs (nPSCs). Control samples RNA was extracted from the aqueous p...
ORGANISM(S): Mus musculus 
2025-09-16 | E-MTAB-15428 | biostudies-arrayexpress
TranscriptomicsRNA-seq for identifying semi-extractable and OOPS RNAs in naive mouse embryonic stem cells after thapsigargin stress
Total RNA-seq data from samples produced using conventional TRIzol RNA extraction (control), using the semi-extractability assay (PMID: 28404604) or Orthogonal Organic Phase Separation (OOPS; PMID: 30607034, PMID: 32651564) in naive mESCs (nPSCs) after the cells were exposed to 10 μM thapsigargin fo...
ORGANISM(S): Mus musculus 
2026-08-17 | E-MTAB-17443 | biostudies-arrayexpress
GenomicsComprehensive identification of RNA–protein interactions in any organism using orthogonal organic phase separation (OOPS)
Comprehensive identification of RNA–protein interactions in any organism using orthogonal organic phase separation (OOPS)s
PRJEB26736 | ENA
UnknownOOPS: Object-Oriented Polarization Software for analysis of fluorescence polarization microscopy images.
Not available
S-EPMC11341096 | biostudies-literature
UnknownComprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS).
Not available
S-EPMC6591131 | biostudies-literature
UnknownEfficient recovery of the RNA-bound proteome and protein-bound transcriptome using phase separation (OOPS).
Not available
S-EPMC7613161 | biostudies-literature
GenomicsRNA-seq for identifying semi-extractable and OOPS RNAs in naive mouse embryonic stem cells (second batch)
RNA-seq for identifying semi-extractable and OOPS RNAs in naive mouse embryonic stem cells (second batch)
PRJEB94399 | ENA
ProteomicsOrthogonal Organic Phase Separation protocol (2018)
Identification of RNA–protein interactions currently requires a quantity and quality of sample that precludes their widespread application, especially for dynamic biological systems or precious samples. Here, we present Orthogonal Organic Phase Separation (OOPS), a new approach to enrich RNA Binding...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2018-12-17 | PXD009668 | Pride
Rna-binding Human Oops Rbpome Proteome E.coli 
GenomicsRNA-seq for identifying semi-extractable and OOPS RNAs in naive and primed mouse embryonic stem cells
RNA-seq for identifying semi-extractable and OOPS RNAs in naive and primed mouse embryonic stem cells
PRJEB85069 | ENA
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