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ProteomicsOptimal Cutting Temperature Embedding Media Study
The goal of the Optimal Cutting Temperature (OCT) Embedding Media Study was to measure the effect of OCT embedding on peptide identification. One OCT embedded sample and one snap frozen sample were compared. Each sample was analyzed 3 times using label free proteomic profiling. The data sets below c...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2018-11-02 | MSV000083095 | MassIVE
UnknownQuantitative Proteomic Analysis of Optimal Cutting Temperature (OCT) Embedded Core-Needle Biopsy of Lung Cancer.
Not available
S-EPMC5693617 | biostudies-literature
UnknownUPLC‑MS/MS‑based metabolomic characterization and comparison of pancreatic adenocarcinoma tissues using formalin‑fixed, paraffin‑embedded and optimal cutting temperature‑embedded materials.
Not available
S-EPMC6831194 | biostudies-literature
UnknownQuantitative glycoproteomic analysis of optimal cutting temperature-embedded frozen tissues identifying glycoproteins associated with aggressive prostate cancer.
Not available
S-EPMC4285776 | biostudies-literature
ProteomicsDifferentially embedded glioblastoma tumor protein quantitation
Glioblastoma multiforme (GBM) is the most aggressive malignant primary brain tumor with a dismal mean survival even with the current standard of care. Although in vitro cell systems can provide mechanistic insight into the regulatory networks governing GBM cell proliferation and migration, clinical ...
ORGANISM(S): Homo sapiens (Human) 
2014-07-09 | PXD001038 | Pride
Glioblastoma Quantitation Protein expression Itraq Tumor 
TranscriptomicsGene expression in E10.5 Maxillary Arch Mesenchyme from control and Lhx6-/-;Lhx8-/- mutant embryos
We used laser capture microdissection to isolate maxillary arch mesenchyme from E10.5 embryos. This tissue was collected from both control (3x) and Lhx6-/-;Lhx8-/- mutant (3x) samples. Transcriptional profiling was performed using Affymetrix GeneChip Mouse Genome 430 2.0 arrays. The mutant mice are...
ORGANISM(S): Mus musculus 
2015-07-23 | E-GEOD-71285 | biostudies-arrayexpress
TranscriptomicsGenomic (in)stability of the breast tumor microenvironment
The breast tumor microenvironment plays an active role in tumorigenesis. Molecular alterations, including epigenetic modifications to DNA, and changes in RNA and protein expression have been identified in tumor-associated stroma; however, there is considerable debate as to whether the stroma is char...
ORGANISM(S): Homo sapiens 
2012-12-21 | E-GEOD-38071 | biostudies-arrayexpress
ProteomicsMass spectrometry-based quantification of proteins in tumor samples from tissue preserved by different methods – a source of markers of urothelial bladder cancer
Tissue samples in biobanks preserved by formalin-fixation and paraffin-embedding (FFPE) and/or optimal cutting temperature (OCT)-embedded and subsequently freezing are highly valuable in experimental studies where the results can be related to clinical parameters. Today, mass spectrometry (MS)-based...
ORGANISM(S): Homo sapiens (Human) 
2021-09-09 | PXD020194 | Pride
Formalin-fixed and paraffin-embedded Ffpe Optimal cutting temperature embedded Urinary bladder cancer. Biobank tissue samples Mass spectrometry Proteomics Oct 
ProteomicsHeat stress induced proteomes in tomato pollen mother cells and microspores
During the reproductive stage, tomatoes require nighttime temperatures below 21°C and daytime temperatures below 32°C for healthy flower development and fruit set. Prolonged exposure to temperatures above the optimal range can cause abnormalities in pollen development, leading to reduced fertility o...
ORGANISM(S): Solanum lycopersicum 
2025-05-07 | PXD060801 | Pride
Laser capture microdissection Pollen heat stress Tmt proteomics Tomato free microspores 
Genomicseef9d1ed-3f37-4906-93d3-87854079e342 - samples
Samples encompass primary colorectal tumors or metastasis of 75 patients, collected by Medical Pathologists from surgically removed specimens. Tissues were embedded in optimal cutting temperature (OCT) medium, snapshot frozen in liquid nitrogen within 40 minutes of collection and preserved at -80ÂÂ...
EGAD00001009506 | EGA
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