Oral pathology - OmicsDI

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Organisms

Homo sapiens (62)
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Mus (1)
human saliva metagenome (1)
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human gut metagenome (1)

Repository

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pride (32)
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Tissue

Saliva (5)
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Brain (2)
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Lung (1)
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OKF-6 cell (1)
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Primary cell (1)
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Disease

Breast cancer (3)
Head and neck squamous cell carcinoma (2)
XCGD (1)
Haemorrhoids (1)
Bowel Cancer screening (1)
Colonic adenomas (1)
Inflammatory bowel diseases (1)
Colorectal Neoplasms (1)
Alzheimer's disease (1)
Cholangiocarcinoma (1)
Colon cancer (1)
Neck carcinoma (1)
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Technology Type

Mass Spectrometry (32)
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Mass spectrometry (3)
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Instrument Platform

Tru-cut biopsy needle (Marquee®, 16 G × 10 cm) (2)
. (2)
Agilent High resolution C scanner (2)
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Bruker (2)
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Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

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CHEBI ID

CHEBI:15428 (4)
CHEBI:16919 (4)
CHEBI:17234 (3)
CHEBI:28300 (3)
CHEBI:24898 (3)
CHEBI:27266 (3)
CHEBI:15366 (3)
CHEBI:6650 (3)
CHEBI:16449 (3)
CHEBI:17368 (3)
CHEBI:33984 (2)
CHEBI:33942 (2)
CHEBI:26271 (2)
CHEBI:22660 (2)
CHEBI:27570 (2)
CHEBI:30751 (2)
CHEBI:18186 (2)
CHEBI:26986 (2)
CHEBI:16811 (2)
CHEBI:25017 (2)
CHEBI:28044 (2)
CHEBI:18211 (2)
CHEBI:16359 (2)
CHEBI:17306 (2)
CHEBI:29016 (2)
CHEBI:16704 (2)
CHEBI:17750 (2)
CHEBI:25094 (2)
CHEBI:18257 (2)
CHEBI:18237 (2)

Metabolite Name

Glutamine (4)
Creatine (4)
Hypoxanthine (4)
Formate (3)
Acetate (3)
Leucine (3)
Valine (3)
Betaine (3)
Citrulline (3)
Ornithine (3)
Tyrosine (3)
Phenylalanine (3)
Trehalose (3)
Creatinine (3)
Taurochenodeoxycholic acid (2)
Glycodeoxycholic acid (2)
Histidine (2)
Ethanol (2)
Hexanoylglycine (2)
Nicotinamide N-oxide (2)
Aspartate (2)
1-Methylguanosine (2)
Glycine (2)
Trigonelline (2)
Biopterin (2)
Allantoin (2)
1-Methylhistidine (2)
Methionine (2)
Choline (2)
Glycolithocholic acid (2)

First Public Date

2025 (30)
2024 (21)
2022 (18)
2014 (17)
2026 (16)
2019 (13)
2023 (10)
2021 (9)
2015 (8)
2017 (7)
2018 (6)
2020 (4)
2016 (3)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Recruiting (2)
Completed (2)
Not yet recruiting (1)

Lab affiliation

McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (4)
Department of Oral Biology and Pathology, Faculty of Odontology, Malmö University, Malmö, Sweden (2)
The Drug Discovery Lab, Mary S. Easton Center for Alzheimer’s Disease Research, Department of Neurology, David Geffen School of Medicine, 710 Westwood Plaza, University of California Los Angeles, Los Angeles, CA 90095, USA (2)
9McKusick-Nathans Institute of Genetic Medicine, 10Departments of Biological Chemistry, and 11Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Beijing, You An Men Wai Xi Tou Tiao No.10, Capital Medical University, Beijing Laboratory of Oral Health (1)
Biotech Research and Innovation Centre (BRIC) University of Copenhagen, Copenhagen, Denmark (1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
Department of Chemical and Biological Engineering, Tufts University; Medford, MA 02155, USA Artie McFerrin Department of Chemical Engineering, Texas A&M University; College Station, TX 77843, USA, Department of Microbial Pathogenesis and Immunology, College of Medicine, Texas Health Science Center, Texas A&M University; Bryan, TX, USA (1)
Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota (1)
Department of Neuropathology, Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany (1)
Department of Oral Biology and Pathology, Faculty of Odontology, Malmo University, Malmo, Sweden (1)
Department of Oral Biology and Pathology, Faculty of Odontology, Malmö University, Malmö, Sweden Genovis AB, Kävlinge, Sweden (1)
Department of Oral Surgery and Pathology, School of Dentistry, Federal University of Minas Gerais (1)
Department of Pathology, School of Dentistry, Chosun University, Gwangju, 61452; Republic of Korea (1)
Departments of Pathology, Boston Children’s Hospital and Harvard Medical School, Boston, MA, USA (1)
Dept. Oncology Pathology, Karolinska Institutet, and ScilifeLab, Stockholm, Sweden (1)
Lab's head of proteomics platform, Montpellier hospital (1)
Laboratory Medicine and Pathology Mayo Clinic USA (1)
National Institute of Standards and Technology, Charleston, South Carolina, USA (1)
No. 2 West Yuanmingyuan Road, Haidian District, Beijing (1)
Project investigatior, institute of bioinformatics, Bangalore, Inida Project advisor,Mazumdar Shaw Center for Translational Research, Bangalore,India (1)
Research Center for Integrative Evolutionary Science, The Graduate University for Advanced Studies (SOKENDAI) (1)
Research Unit "Functional Proteomics and Metabolic Pathways", Institute of Pathology, Medical University of Graz, Stiftingtalstrasse 24, 8010 Graz, Austria; Austrian Center of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria, Omics Center Graz, Austria (1)
Ruth Birner-Gruenberger, Ph.D. Full Professor for Analytical Chemistry Vienna University of Technology Institute of Chemical Technologies and Analytics Getreidemarkt 9/E164 A-1060 Vienna Austria Associate Professor for Biochemistry Medical University of Graz Diagnostic and Research Institute of Pathology Stiftingtalstrasse 24 A-8010 Graz Austria (1)
Section for Oral Medicine and Oral Pathology, Department of Odontology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark (1)

Keyword

Capecitabina (1)
Temozolomide (1)
Capecitabine (1)
Irinotecan (1)
Leucovorin (1)
Fluorouracil (1)

IsPrivate

False (1)

Model Flag

Non Miriam (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (17)
Comparative genomic hybridization by array (6)
Methylation profiling by array (3)
RNA-seq of non coding RNA (3)
Interventional (3)
ChIP-chip by tiling array (2)
Observational (2)
Unknown experiment type (1)
Animal - One-color microarray (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
ChIP-seq (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (981)
2021 (920)
2025 (861)
2023 (852)
2024 (655)
2020 (638)
2019 (504)
2018 (456)
2017 (374)
2016 (359)
2015 (342)
2014 (273)
2013 (194)
2012 (166)
2026 (128)
2011 (113)
2010 (91)
2009 (61)
2008 (49)
2006 (21)
2007 (19)
2005 (17)
2004 (13)
2002 (11)
1998 (10)
2003 (6)
2001 (6)
2000 (5)
1999 (3)
1997 (1)

Location

Australia (4)
Italy (1)

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Oral dysplasias and oral squamous cell carcinoma

Analysis of DNA from 94 oral lesions by whole genome tiling-path array comparative genomic hybridization. Keywords: array comparative genomic hybridization Whole genome tiling-path array CGH profiles of 94 formalin-fixed paraffin-embedded oral specimens.

ORGANISM(S): Homo sapiens

2008-12-30 | E-GEOD-9193 | biostudies-arrayexpress

OSCC Illumina GoldenGate Methylation

This study aims to compare the DNA methylome across a large cohort of oral squamous cell carcinoma and matched normal samples. DNA from 44 OSCCs and paired normal mucosa were analysed using Illumina GoldenGate methylation array. This data was correlated with extracapsular spread (extracapsular sprea...

ORGANISM(S): Homo sapiens

2013-08-02 | E-MTAB-1298 | biostudies-arrayexpress

Evaluating the effectiveness of problem-based learning combined with six thinking hats in oral pathology education.

Not available

S-EPMC12495789 | biostudies-literature

Third dimension on histopathological aspect of oral lichen planus: An innovation in teaching oral pathology.

Not available

S-EPMC6714284 | biostudies-literature

A 10-Year Review of Intraoral Salivary Gland Tumor Diagnoses: Diagnostic Challenges and Inter-Observer Agreement.

Not available

S-EPMC10063724 | biostudies-literature

Systematic Comparison of Mouse and Human Oral Squamous Cell Carcinoma by Using Functional Transcriptomic Analysis

This study aims to compare the global expression signature of protein coding genes between oral cancers from carcinogen-induced mice and human patients. Combinatorial treatment of 4NQO and arecoline for 8 weeks consistently induced the formation of mouse oral cancer with morphology and pathology res...

ORGANISM(S): Mus musculus

2015-12-17 | E-GEOD-64271 | biostudies-arrayexpress

Comparative Proteomics of PairedVocal Fold and Oral Mucosa Fibroblasts

Injuries of the vocal folds frequently heal with scar formation, which can have lifelong detrimental impact on voice quality. Current treatments to prevent or resolve scars of the vocal fold mucosa are highly unsatisfactory. In contrast, the adjacent oral mucosa is mostly resistant to scarring. Thes...

ORGANISM(S): Ovis aries

2017-01-23 | PXD005106 | Pride

Oral cancer diagnosis during the COVID-19 pandemic in an oral pathology laboratory in Rio de Janeiro, Brazil.

Not available

S-EPMC7675358 | biostudies-literature

Validation of microRNA expression profile in Oral Lichenoid Disease through cytological samples.

Not available

S-EPMC6764714 | biostudies-literature

Critical update, systematic review, and meta-analysis of oral erythroplakia as an oral potentially malignant disorder.

Not available

S-EPMC9545979 | biostudies-literature

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