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MetabolomicsPublic LC-Orbitrap-MS/MS Spectral Library for Metabolite Identification

Liquid chromatography-mass spectrometry (LC-MS)-based untargeted metabolomics studies require high-quality spectral libraries for reliable metabolite identification. We have constructed EMBL-MCF (European Molecular Biology Laboratory-Metabolomics Core Facility), an open LC-MS/MS spectral library ...

2020-09-28 | MTBLS1861 | MetaboLights
ProteomicsGerm-free mouse ileum iTRAQ shotgun LC-MSMS
Shotgun proteomics of normal versus germ-free mouse terminal ileum. 39 mice. Male and female. BALBc and C57BL10. The samples were labeled using iTRAQ 8plex and analyzed using a nano-LC-LTQ-Orbitrap-Velos-MSMS. This is the proteomics data from an n-omics project.
ORGANISM(S): Mus musculus (Mouse) 
2017-10-04 | PXD003177 | Pride
Lc-msms Germ-free Mouse Itraq Orbitrap Ileum 
ProteomicsKmc project LC-MSMS CID70 CID35 2025
Mass screening of crude extracts prepared from Actinokineospora auranticolor fermentation and LC-MSMS data acquisition for structure analysis.
ORGANISM(S): Actinokineospora Auranticolor (ncbitaxon:155976) 
2025-02-22 | MSV000097194 | MassIVE
ProteomicsLC-MSMS files for modeling bacterial interactions in coastal lignin degrading consortium
LC-MSMS files for modeling bacterial interactions in coastal lignin degrading consortium
ORGANISM(S): Environmental Samples <bacillariophyta> (ncbitaxon:33858) 
MSV000095828 | MassIVE
ProteomicsMaize ZmENR1 interactor identification by coimmunoprecipitation and LC-MSMS
Identify ZmENR1 protein interactors by analyzing the immunoprecipitated protein using LC-MSMS
ORGANISM(S): Zea mays (Maize) 
2024-11-04 | PXD055301 | Pride
Maize anther chloroplast lc-msms 
ProteomicsSus scrofa, skeletal muscle, LC-MSMS
Skeletal muscle were collected from pigs treated in the control group, the Lys deficiency group and the Lys rescue group. Then, the samples were analyzed by LC-MSMS.
ORGANISM(S): Sus scrofa domesticus (domestic pig) 
2020-05-27 | PXD016396 | Pride
Lc-msms Skeletal muscle Sus scrofa 
ProteomicsIdentification of SFXN1 partners LC-MSMS
Sideroflexins (SFXN) are evolutionarily conserved mitochondrial carriers belonging to the SCL56 family. Because little is known about SFXN1 interactome, a high-throughput search of SFXN1 binding partners was launched with the aim to better understand its mitochondrial functions. The large-scale iden...
ORGANISM(S): Homo sapiens (Human) 
2022-10-14 | PXD030749 | Pride
Mitochondria Mcf-7 Coip/lc-msms 
ProteomicsPlasmodium falciparum PM X LC-MSMS
Plasmepsin X (PM X) is an aspartate protease expressed in the malaria parasie Plasmodium falciparum. Following synthesis PM X undergoes proteolytic processing. This project aims to understand the significance of PM X processing. To identify the cleavage sites, the processed PM X bands were excised f...
ORGANISM(S): Plasmodium falciparum (isolate 3D7) 
2022-10-14 | PXD035172 | Pride
Lc-msms Malaria Plasmepsin x Plasmodium 
ProteomicsLC-MSMS analyses of purified, recombinant TcJHR complexes
Juvenile hormone (JH) serves vital roles in insect reproduction, development, and many aspects of physiology. JH primarily acts at the gene-regulatory level through an intracellular receptor. The JH receptor (JHR) is a ligand-activated complex of transcription factors of the bHLH-PAS family, consist...
ORGANISM(S): Tribolium castaneum (Red flour beetle) 
2022-02-16 | PXD028394 | Pride
Lc-msms Juvenile hormone receptor Tribolium castaneum 
ProteomicsCopper binding proteins identified by LC-MSMS from HepG2 cell
Copper is an essential micronutrient trace metal element for all living cells. To study the function of copper in cell cycle, we isolated copper binding proteins by using IMAC resin charged with copper, then identified the binding proteins by LC-MSMS. Cell cycle related proteins which binding copper...
ORGANISM(S): Homo sapiens (Human) 
2025-02-22 | PXD054518 | Pride
Hepg2 cell lc-msms 
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