Sort   by:  
 Page size 
TranscriptomicsSalt stress in salt sensitive Oryza sativa Indica group IR29
Oryza sativa Indica group IR29 (salt sensitive) seedlings were subjected to salt stress or control conditions and sampled at five time points over the course of 24 hours. RNA samples extracted were assayed using the Illumina HiSeq 2000 platform.
ORGANISM(S): Oryza sativa Indica group 
2017-10-02 | E-MTAB-1913 | biostudies-arrayexpress
TranscriptomicsTranscriptome and methylome interactions in rice hybrids
This research reports genome-wide measurements of genetic and epigenetic patterns of inheritance through an integrative analysis of BS-seq, RNA-seq, and siRNA-seq data in two inbred parents of the Nipponbare (NPB) and Indica (93-11) variety of rice and their hybrid offspring. We generated integrativ...
ORGANISM(S): Oryza sativa Indica Group 
2012-07-10 | E-GEOD-38480 | biostudies-arrayexpress
TranscriptomicsSalt stress in salt sensitive Oryza sativa Indica group Pokkali (salt sensitive)
Oryza sativa Indica group Pokkali (salt sensitive) seedlings were subjected to salt stress or control conditions and sampled at five time points over the course of 4 hours. RNA samples extracted were assayed using the Illumina HiSeq 2000 platform.
ORGANISM(S): Oryza sativa Indica group 
2020-01-01 | E-MTAB-1914 | biostudies-arrayexpress
TranscriptomicsDegradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica)
MicroRNAs (miRNAs) and small interfering RNAs (siRNAs) regulate gene expression in eukaryotes. Plant miRNAs modulate their targets mainly via messenger RNA (mRNA) cleavage. Small RNA targets have been extensively investigated in Arabidopsis using computational prediction, experimental validation, an...
ORGANISM(S): Oryza sativa Indica Group 
2010-01-01 | E-GEOD-19050 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling in reciprocal hybrids and tetraploids constructed from subspecies japonica and indica of Asian rice (Oryza sativa L.)
Hybrids and allopolyploids typically exhibit radically altered gene expression patterns relative to their parents, a phenomenon termed “transcriptomic shock.” To distinguish the effects of hybridization from polyploidization on coregulation of divergent alleles, we analyzed expression of parenta...
ORGANISM(S): Oryza sativa 
2014-02-18 | E-MTAB-4271 | biostudies-arrayexpress
TranscriptomicsOryza sativa ssp. indica Illumina libraries of the method plant-RRBS used for methylome profiling
The contained data consist of Illumina HiSeq 2500 reads generated from restriction endonuclease digested genomic DNA of Oryza sativa ssp. indica used as proof of concept for plant-RRBS methylome profiling by bioinformatics analyses. Five biological repeats for an inbred control line and a derived ep...
ORGANISM(S): Oryza sativa Indica Group 
2017-12-14 | E-MTAB-4626 | biostudies-arrayexpress
TranscriptomicsOryza sativa ssp. indica Illumina lwhole-genome bisulfite sequencing used for coverage comparison next to the method plant-RRBS
The contained data consist of Illumina HiSeq reads generated genomic DNA of Oryza sativa ssp. indica used for comparative coverage aspects with plant-RRBS methylome profiling by bioinformatics analyses. The inbred control line and a derived epiline LR2 of the 4th selfing were analysed using whole-ge...
ORGANISM(S): Oryza sativa Indica Group 
2017-12-14 | E-MTAB-5002 | biostudies-arrayexpress
TranscriptomicsChIP-seq of Oryza sativa ssp. indica epilines
The contained data consist of Illumina NextSeq reads generated genomic DNA of Oryza sativa ssp. indica used for ChIP-seq analysis. The inbred control line and a derived epiline LR2 of the 5th selfing were analysed using chromatin immunoprecipitation sequencing.
ORGANISM(S): Oryza sativa Indica Group 
2020-06-21 | E-MTAB-6982 | biostudies-arrayexpress
TranscriptomicsGlobal expression profiling of low temperature induced genes in chilling tolerant japonica rice
Three week old seedlings of rice cultivar Jumli Marshi (spp. Japonica) was exposed to cold (+4C) temperatures for varying time periods. Tissue samples were collected in replicates. Microarray data analysis was then performed on the extracted totalRNA from the samples.
ORGANISM(S): Oryza sativa japonica 
2013-05-01 | E-MEXP-3718 | biostudies-arrayexpress
TranscriptomicsExpression data from Oryza sativa 3037 (wild-type) and sd37 (mutant) seedlings
We characterized a rice (Oryza sativa L ssp. indica cultivar 3037) semi-dwarf mutant sd37, in which CYP96B4 gene (Cytochrome P450 96B subfamily) was identified as the target gene by map-based cloning and complementation test. A point mutation in CYP96B4 leads to a substitution of Thr to Lys in the S...
ORGANISM(S): Oryza sativa Indica Group 
2013-07-09 | E-GEOD-48593 | biostudies-arrayexpress
Sort   by:  
 Page size