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ProteomicsSite-Link for identification of chromatinized proteome defined by site-specific histone acylations in living cells
By coupling the mass spectrometry, we developed the Site-Link strategy based on the GCE method for analyzing the interacting proteome of histone lysine acylations in living cells. As K* could mimic the natural lysine to be recognized by natural lysine synthase, histones bearing the site-specifically...
ORGANISM(S): Homo sapiens (Human) 
2023-03-06 | PXD033959 | Pride
K*56pabk* Site-link K*37cr K*56ac 
ProteomicsPhos-tag SDS-PAGE followed by LC-MS/MS analysis of in vitro phosphorylated Nab2, Foxk1, and HURP
Purified GST-fused Nab2, Foxk1, and HURP were incubated with ATP in the presence or absence of His-tagged active ERK in vitro, separated by Phos-tag SDS-PAGE, and visualized by CBB staining. The most shifted regions of protein bands on the Phos-tag-containing gels were excised, digested with trypsin...
ORGANISM(S): Mus Musculus (mouse) 
2022-03-03 | PXD028837 | JPOST Repository
ProteomicsA multivalent OMV vaccine induces broad protection against major K. pneumoniae disease-causing serotypes
Kp‑OMV4 is a multivalent outer membrane vesicle (OMV)–based vaccine generated from four multidrug‑resistant Klebsiella pneumoniae strains expressing the predominant O‑antigen serotypes O1, O2, O3 and O5, which together account for most invasive disease worldwide. OMVs were purified, characterized by...
ORGANISM(S): Klebsiella pneumoniae IS43 
2026-09-29 | PXD072958 | Pride
Lc-ms/sm. k. pneumoniae. omvs 
ProteomicsIdentification of PP1c-PPP1R12A Substrates Using K-BIPS (Kinase-Catalyzed Biotinylation to Identify Phosphatase Substrates)
Protein phosphatase 1 regulatory subunit 12A (PPP1R12A) interacts with the catalytic subunit of protein phosphatase 1 (PP1c) to form one of the many protein phosphatase 1 complexes, PP1c-PPP1R12A (or myosin phosphatase). In addition to a well-documented role in muscle contraction, the PP1c-PPP1R12A ...
ORGANISM(S): Rattus norvegicus (Rat) 
2023-10-24 | PXD035213 | Pride
Protein phosphatase 1  pp1  ppp1r12a  chemoproteomics  substrate identification 
ProteomicsIdentification of PP1c-PPP1R12A Substrates Using K-BIPS (Kinase-Catalyzed Biotinylation to Identify Phosphatase Substrates)
Protein phosphatase 1 regulatory subunit 12A (PPP1R12A) interacts with the catalytic subunit of protein phosphatase 1 (PP1c) to form one of the many protein phosphatase 1 complexes, PP1c-PPP1R12A (or myosin phosphatase). In addition to a well-documented role in muscle contraction, the PP1c-PPP1R12A ...
ORGANISM(S): Rattus norvegicus (Rat) 
2023-10-24 | PXD035212 | Pride
Protein phosphatase 1  pp1  ppp1r12a  chemoproteomics  substrate identification 
ProteomicsIdentification of PP1c-PPP1R12A Substrates Using K-BIPS (Kinase-Catalyzed Biotinylation to Identify Phosphatase Substrates)
Protein phosphatase 1 regulatory subunit 12A (PPP1R12A) interacts with the catalytic subunit of protein phosphatase 1 (PP1c) to form one of the many protein phosphatase 1 complexes, PP1c-PPP1R12A (or myosin phosphatase). In addition to a well-documented role in muscle contraction, the PP1c-PPP1R12A ...
ORGANISM(S): Rattus norvegicus (Rat) 
2023-10-24 | PXD035211 | Pride
Protein phosphatase 1  pp1  ppp1r12a  chemoproteomics  substrate identification 
ProteomicsThe catalytic mechanism of vitamin K epoxide reduction in a cellular environment
Vitamin K epoxide reductases (VKOR) constitute a major family of integral membrane thiol oxidoreductases. In humans, VKOR sustains blood coagulation and bone mineralization through the vitamin K cycle. Previous chemical models assumed that the catalysis of human VKOR (hVKOR) starts from a fully redu...
ORGANISM(S): Homo sapiens (Human) 
2020-12-03 | PXD020676 | Pride
Human vkor Lc/ms/ms Catalytic mechanism 
TranscriptomicsLymph miRNA in FcgRIIA transgenic mice, in K/BxN rheumatoid arthritis
Thoracic lymph was collected from FcgRIIA transgenic mice, after 7 day of K/BxN arthritis. Cells were removed by centrifugation, and extra-cellular microRNAs were assessed by short RNA Illumina sequencing (Arraystar Inc, 16-30 nt). 3 control (injected with PBS) and 3 K/BxN (injected I.P. with 150 µL...
ORGANISM(S): Mus musculus 
2020-04-02 | E-MTAB-8171 | biostudies-arrayexpress
GenomicsGranzyme K CD8 T cells form a core population in inflamed human tissue
Granzyme K CD8 T cells form a core population in inflamed human tissue
PRJNA985379 | ENA
GenomicsGranzyme K CD8 T cells form a core population in inflamed human tissue
Granzyme K CD8 T cells form a core population in inflamed human tissue
PRJNA985378 | ENA
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