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UnknownTumor immunology and cancer immunotherapy: summary of the 2014 SITC primer
Not available
S-EPMC4469248 | biostudies-literature
ProteomicsMembranous translation platforms in the chloroplast of Chlamydomonas reinhardtii
We characterized membranes with chloroplast ribosomes during chloroplast development (using the yellow-in-the-dark 1 mutant) and carried out proteomic analyses of two distinct membrane types as translation platforms for chloroplast ribosomes. The results support roles of “low-density membrane” as a ...
ORGANISM(S): Chlamydomonas reinhardtii 
2025-03-24 | PXD058102 | Pride
Chloroplast Photosynthesis Ribosome Thylakoid Membrane Translation 
ProteomicsComparative analysis of Chrysoporthe cubensis exoproteomes and their specificity for saccharification of sugarcane bagasse
The phytopathogenic fungus Chrysoporthe cubensis is a relevant source of lignocellulolytic enzymes. This work aimed to compare the profile of lignocellulose- degrading proteins secreted by C. cubensis grown under semi-solid state fermentation using wheat bran and sugarcane bagasse. The proteins from...
ORGANISM(S): Fungi Chrysoporthe cubensis 
2024-01-26 | PXD046075 | Pride
Chrysoporthe cubensis  wheat bran  sugarcane bagasse  cazymes  exoproteome  biomass saccharification 
ProteomicsInteractome analysis of chloroplast ClpC1 chaperone in Arabidopsis thaliana
The chloroplast stromal CLP protease system is essential for growth and development, consisting of a proteolytic core complex that interacts with ClpC1, ClpC2, or ClpD AAA+ chaperones. In this study, an in vivo ClpC1 substrate trap with a C-terminal STREPII affinity tag was generated, and MS/MS anal...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-02-05 | PXD017400 | Pride
Clpc1 arabidopsis interactome chloroplast chaperone 
TranscriptomicsRegulation of dendritic cell genes by alpha fetoprotein
Human dendritic cells (DC) are suppressed by tumor-derived alpha fetoprotein (AFP), but less so by cord blood-derived normal AFP. We tested human DC from 5 healthy donors for transcriptional changes induced by tumor (tAFP) or cord blood (nAFP) AFP, vs. chicken ovalbumin (OVA) control.
ORGANISM(S): Homo sapiens 
2014-12-23 | E-GEOD-62005 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse hearts from mutants lacking estrogen-related receptor alpha (ERRalpha), a nuclear receptor
Total RNA was isolated from 3 WT and 3 ERRalpha null hearts and independent hybridizations were performed using MOE430 2.0 microarrays. Expression profiling was conducted to determine changes in gene expression in hearts lacking ERRa. The expression of genes involved in heart and muscle development,...
ORGANISM(S): Mus musculus 
2007-11-10 | E-GEOD-7196 | biostudies-arrayexpress
ProteomicsHepatic Huwe1 loss protects mice from non-alcoholic fatty liver disease through lipid metabolic rewiring
Non-alcoholic fatty liver disease (NAFLD) is the most prevalent form of liver disease worldwide and is estimated to affect nearly a third of the population. Huwe1, also known as ARF-BP1, MULE, and HectH9, is a HECT (homology to E6-APC terminus)-domain E3 ubiquitin ligase originally identified as a b...
ORGANISM(S): Mus musculus (Mouse) 
2024-01-26 | PXD045279 | Pride
Nafld Rxr Ppar Steatosis 
UnknownComprehensive functional testing in fibroblasts has strong utility to diagnose mitochondrial disease
Not available
S-SCDT-10_1038-S44321-026-00497-3 | biostudies-other
UnknownSpermatocytes have the capacity to segregate chromosomes despite centriole duplication failure
Not available
S-SCDT-10_1038-S44319-024-00187-6 | biostudies-other
ProteomicsAn RNA granule for translation quality control in Saccharomyces cerevisiae
Cytoplasmic RNA granules compartmentalize phases of the translation cycle in eukaryotes. We previously reported the localization of oxidized RNA to cytoplasmic foci called oxidized RNA bodies (ORBs) in human cells. We show here that ORBs are RNA granules in Saccharomyces cerevisiae. Several lines of...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-11-23 | PXD037184 | Pride
Translation. Rna granules Oxidized rna Ribosome-associated quality control No-go decay 
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