Pan Shen S - OmicsDI

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Unknown (1042)
Proteomics (32)
Metabolomics (28)
Transcriptomics (16)
Genomics (6)
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Homo sapiens (24)
Mus musculus (18)
Zea mays (2)
Tardigrada (2)
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Nicotiana tabacum (1)
Sus scrofa (1)
Listeria monocytogenes (1)
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MetaboLights (28)
biostudies-arrayexpress (22)
pride (20)
iProX (11)
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Cell culture (5)
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Disease

Non-alcoholic steatohepatitis (2)
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Technology Type

Mass Spectrometry (20)
Mass spectrometry (17)
Mass spectrometry assay (11)
Shotgun proteomics (7)
Data-independent acquisition (6)
SWATH MS (6)
Affinity purification coupled with mass spectrometry proteomics (3)
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Data-dependent acquisition (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (14)
Liquid Chromatography MS - negative - reverse phase (12)
Illumina NovaSeq 6000 (7)
Liquid Chromatography MS - alternating - reverse-phase (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
NanoDrop 2000 spectrophotometer (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - negative - HILIC - Triple 6600 (AB Sciex) (1)
Liquid Chromatography MS - negative - HILIC - TripleTOF 6600 (AB Sciex) (1)
Liquid Chromatography MS - positive - HILIC - TripleTOF 6600 (AB Sciex) (1)
Liquid Chromatography MS - positive - HILIC - TripleTOF 6600 (AB sciex) (1)

Publication Date

2025 (16)
2026 (15)
2022 (12)
2024 (7)
2012 (6)
2021 (5)
2019 (5)
2023 (3)
2016 (2)
2015 (2)
2014 (2)
2010 (2)
2020 (2)
2013 (1)
2011 (1)
2017 (1)
2018 (1)

CHEBI ID

CHEBI:17368 (12)
CHEBI:16704 (11)
CHEBI:16919 (11)
CHEBI:17015 (11)
CHEBI:17596 (11)
CHEBI:15891 (10)
CHEBI:16015 (10)
CHEBI:16750 (10)
CHEBI:17533 (10)
CHEBI:16335 (9)
CHEBI:17687 (9)
CHEBI:18295 (9)
CHEBI:73688 (9)
CHEBI:16235 (8)
CHEBI:16680 (8)
CHEBI:16708 (8)
CHEBI:16870 (8)
CHEBI:16927 (8)
CHEBI:17295 (8)
CHEBI:17562 (8)
CHEBI:17568 (8)
CHEBI:17802 (8)
CHEBI:18344 (8)
CHEBI:21547 (8)
CHEBI:28842 (8)
CHEBI:28997 (8)
CHEBI:73024 (8)
CHEBI:10072 (7)
CHEBI:15971 (7)
CHEBI:16027 (7)

Metabolite Name

Hypoxanthine (13)
Taurine (12)
Creatine (11)
Guanosine (11)
Cytidine (10)
Riboflavin (10)
Adenine (9)
Adenosine (9)
Inosine (9)
Uridine (9)
Choline (8)
Cytosine (8)
Histamine (8)
Indole (8)
Oleamide (8)
Uracil (8)
Xanthosine (8)
5'-Methylthioadenosine (7)
Betaine (7)
Cholic acid (7)
Glycine (7)
L-Glutamate (7)
L-Glutamine (7)
L-Histidine (7)
Proline (7)
Thiamine (7)
4-Pyridoxic acid (6)
Acetylcholine (6)
Biopterin (6)
Deoxycholic acid (6)

Study type

RNA-seq of coding RNA (8)
ChIP-seq (5)
Other (3)
RAN-seq of total RNA from single cells (1)
RIP-seq (1)
Transcription profiling by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (184)
2022 (131)
2024 (127)
2023 (127)
2021 (111)
2020 (88)
2019 (49)
2018 (42)
2026 (35)
2015 (35)
2017 (33)
2016 (31)
2012 (22)
2014 (16)
2013 (9)
2011 (9)
2009 (7)
2010 (5)
2008 (1)
2007 (1)
2003 (1)

Lab affiliation

Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (2)
Children's Hospital of Philadelphia Division of Oncology and Center for Childhood Cancer Research USA (1)
College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China (1)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (1)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China (1)
Department of Orthopedics, the Eighth Affiliated Hospital of Sun Yat-sen University, Shenzhen 518003, P.R. China (1)
Hubei University of Medicine, Taihe Hospital (1)
Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University (1)
Institute of Reproductive Health, Tong Ji Medical College, Hua Zhong University of Science and Technology, Wuhan, China. (1)
Institutes of Biomedicine Science, Fudan University (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (1)
Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China (1)
West China Second University Hospital, Sichuan University (1)
fudan university (1)
nanjing agriculture university (1)
westlake university (1)

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Targeting ubiquitin-independent proteasome with small molecule increases susceptibility in pan-KRAS mutant cancers

Despite advances in the development of direct KRAS inhibitors, KRAS-mutant cancers continue to exhibit resistance to the currently available therapies. Here, we identified REGγ as a mutant KRAS-associated factor that enhances REGγ transcription through the KRAS intermediate NRF2, suggesting that the...

ORGANISM(S): Homo Sapiens

2025-01-01 | PXD059364 |

Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine

We explored the hypothesis that adipose tissue contains epigenetically distinct subpopulations of adipocytes that are differentially potentiated to record cellular memories of their environment. Adipocytes are large, fragile, and technically difficult to efficiently isolate and fractionate. We devel...

ORGANISM(S): Sus scrofa

2016-07-20 | E-GEOD-73684 | biostudies-arrayexpress

Shen-Shuai-Ning granule decreased serum concentrations of indoxyl sulphate in uremic patients undergoing peritoneal dialysis.

Not available

S-EPMC6137246 | biostudies-literature

Wen-Shen-Tong-Luo-Zhi-Tong Decoction alleviates bone loss in aged mice by suppressing LONP1-mediated macrophage senescence.

Not available

S-EPMC12305870 | biostudies-literature

Atherosclerosis-related biomarker PABPC1 predicts pan-cancer events.

Not available

S-EPMC11103157 | biostudies-literature

A novel cyclic γ-AApeptide-based long-acting pan-coronavirus fusion inhibitor with potential oral bioavailability by targeting two sites in spike protein.

Not available

S-EPMC9453727 | biostudies-literature

Pan-cancer and single-cell analysis reveal the prognostic value and immune response of NQO1

Not available

S-EPMC10424457 | biostudies-literature

In Vitro and In Vivo Characterizations of Chiglitazar, a Newly Identified PPAR Pan-Agonist.

Not available

S-EPMC3486420 | biostudies-literature

A novel dual histone mark reader ZCWPW2 regulates meiotic recombination through lactylation and transcriptional control in humans and mice

Meiotic recombination ensures proper chromosome segregation and genetic diversity during gametogenesis, and its disruption leads to infertility. It is known that the dual histone methylation writer–reader system, in which PRDM9 deposits H3K4me3 and H3K36me3 marks at nucleosomes to specify recombinat...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2026-01-07 | PXD068838 | Pride

Comprehensive Characterization of Somatic Mutations Impacting lncRNA Expression for Pan-Cancer.

Not available

S-EPMC6745513 | biostudies-literature

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