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ProteomicsMembrane vesicles of Pectobacterium as an underappreciated protein secretion system
Pectobacterium are Gram-negative rods of the family Pectobacteriaceae. They are the causative agent of soft rot diseases of crops and ornamental plants. However, their virulence mechanisms are not yet fully elucidated. Membrane vesicles (MVs) are universally released by bacteria and are be-lieved to...
ORGANISM(S): Pectobacterium zantedeschiae 
2022-02-15 | PXD029090 | Pride
Bacterial membrane vesicles  pectobacterium  proteomic analysis  plant pathogens  bacterial virulence 
ProteomicsProteome analysis of Pectobacterium atrosepticum cells and inhibition effect of exogeneous treatment with lactonase.
The proteome of Pectobacterium atrosepticum cells was established by shotgun proteomics and compared to the proteome of the same bacterium treated with exogeneous lactonase to characterize the molecular modifications induced by the treatment with a quorum sensing inhibitor.
ORGANISM(S): Pectobacterium atrosepticum 
2025-03-25 | PXD054011 | Pride
Phytopathogen Metabolism Virulence Proteomics Pectobacterium Lactonase Soft rot Bacteria Quenching Quorum sensing 
TranscriptomicsTranscriptome microarray of wildtype, relA, expI and rpoS Pectobacterium atrosepticum strains in PMB media
Whole genome analysis of gene expression by Pectobacterium atrosepticum strain SCRI1043 wildtype and its relA, expI and rpoS deletion mutants when grown to exponential and stationary phase in PMB media. The data is further described in Bowden et al (2013) Virulence in Pectobacterium atrosepticum is ...
ORGANISM(S): Pectobacterium atrosepticum SCRI1043 
2013-08-30 | E-GEOD-50468 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Pectobacterium atrosepticum wild and ExpI mutants to determine the quorum sensing regulon
Genome-wide in planta determination of the quorum sensing regulon in Pectobacterium atrosepticum, through gene expression analysis of ExpI mutants using Agilent custom microarrays.
ORGANISM(S): Pectobacterium atrosepticum 
2008-07-01 | E-TABM-384 | biostudies-arrayexpress
TranscriptomicsPectobacterium atrosepticum host extract induced gene expression study
Effects of potato tuber and stem extracts on P atrosepticum gene expression Keywords: gene expression 3-condition experiment, minimal medium vs tuber/stem extract, 2 biological replicates per each condition and 2 technical replicates for minimal medium and tuber samples
ORGANISM(S): Pectobacterium atrosepticum 
2008-05-24 | E-GEOD-11548 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Nicotinan benthamiana in response to Pectobacterium carotovorum WPP14 and Pseudomonas syringae pv. tomato DC3000
Transcription profiling of Nicotinan benthamiana in response to Pectobacterium carotovorum WPP14 and Pseudomonas syringae pv. tomato DC3000
ORGANISM(S): Nicotiana benthamiana 
2010-07-24 | E-TABM-752 | biostudies-arrayexpress
TranscriptomicsTotal mRNA sequence dataset from Pectobacterium atrosepticum colonising potato or radish roots
Pectobacterium atrosepticum (Pba) is a gram-negative bacterium which causes blackleg and tuber soft rot on potato. To investigate the molecular processes and responses involved in Pba-host (potato) and Pba-non-host (radish) interactions, under laboratory conditions, we used total RNA-sequencing to ...
ORGANISM(S): Solanum tuberosum 
2024-01-17 | E-MTAB-13434 | biostudies-arrayexpress
GenomicsPectobacterium
Pectobacterium carotovorum and Pectobacterium brasiliense Genome sequencing and assembly
PRJNA650563 | ENA
TranscriptomicsJHI Pa MC mutants
Plant cell wall degrading enzymes (PCWDEs) are key virulence determinants in the pathogenesis of the potato pathogen, Pectobacterium atrosepticum. In this study, we report the impact on virulence of a transposon insertion mutation in the metJ gene that codes for the repressor of the methionine biosy...
ORGANISM(S): Pectobacterium atrosepticum 
2012-11-02 | E-MTAB-1167 | biostudies-arrayexpress
GenomicsPectobacterium carotovorum
Pectobacterium carotovorum overview
PRJNA37001 | ENA
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