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MetabolomicsThe Formation of Phenol and Indole Flavor Substances in Stinky Tofu Brine Based on Metabolism of Aromatic Amino Acids

Understanding the formation mechanism of the flavor compounds in stinky tofu brine is crucial for controlling the flavor quality of Changsha stinky tofu. Dynamic changes in associated bacteria, enzymes, and differential metabolites in the metabolic pathway of aromatic amino acids in brine were in...

2026-03-20 | MTBLS2849 | MetaboLights
ProteomicsProteomic Profiling of HEK293-F cell and human peripheral blood neutrophil proteins extracted by conventional direct extraction and phenol-guanidinium isothiocyanate (P/GTC)-based extraction methods
To evaluate the performance of the phenol-guanidinium isothiocyanate (P/GTC)-based extraction method in proteomic analysis, we performed proteome analysis from HEK293-F cell and human peripheral blood neutrophil proteins extracted by the P/GTC-based extraction and conventional direct extraction meth...
ORGANISM(S): Homo Sapiens (human) 
2019-10-28 | PXD011487 | JPOST Repository
TranscriptomicsNitrosomonas europaea expression analysis of biofilm growth and biofilms exposed to phenol and toluene
The physiological and transcriptional response of Nitrosomonas europaea biofilms to phenol and toluene was examined and compared to suspended cells. Biofilms were grown in Drip Flow Biofilm Reactors under continuous flow conditions of growth medium containing ammonia as growth substrate. The respo...
ORGANISM(S): Nitrosomonas europaea 
2010-07-20 | E-GEOD-22646 | biostudies-arrayexpress
TranscriptomicsAnaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Benzene vs. Phenol)
Anaerobic benzene oxidation coupled to the reduction of Fe(III) was studied in Ferroglobus placidus in order to learn more about how such a stable molecule could be metabolized under strict anaerobic conditions. F. placidus conserved energy to support growth at 85°C in a medium with benzene provide...
ORGANISM(S): Ferroglobus placidus DSM 10642 
2011-07-19 | E-GEOD-30799 | biostudies-arrayexpress
TranscriptomicsAnaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Phenol vs. Benzoate)
Anaerobic benzene oxidation coupled to the reduction of Fe(III) was studied in Ferroglobus placidus in order to learn more about how such a stable molecule could be metabolized under strict anaerobic conditions. F. placidus conserved energy to support growth at 85°C in a medium with benzene provide...
ORGANISM(S): Ferroglobus placidus DSM 10642 
2011-07-19 | E-GEOD-28549 | biostudies-arrayexpress
ProteomicsPurification of Cross-linked RNA-Protein Complexes by Phenol-Toluol Extraction
Recent methodological advances allowed the identification of an increasing number of RNAbinding proteins (RBPs) and their RNA-binding sites. RNA interactome capture is, however, limited to proteins interacting with polyadenylated RNAs while RBPs associating with nonadenylate RNA classes cannot be pu...
ORGANISM(S): Homo sapiens (Human) Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 
2019-03-12 | PXD009571 | Pride
Human Lc-msms Shotgun Salmonella Rna-binding proteins Ptex 
GenomicsPTex - Purification of Cross-linked RNA-Protein Complexes by Phenol-Toluol Extraction
PTex - Purification of Cross-linked RNA-Protein Complexes by Phenol-Toluol Extraction
PRJNA453536 | ENA
ProteomicsAn optimised protocol for protein extraction from salt gland-enriched tissues of a mangrove tree species for proteomic analysis
Preparation of proteins from salt-gland-enriched tissues of mangrove plant is necessary for a systematic study of proteins involved in the plant’s unique desalination mechanism. Extraction of high-quality proteins from the leaves of mangrove tree species, however, is difficult due to the presence o...
ORGANISM(S): Avicennia officinalis 
2015-07-17 | PXD001691 | Pride
Avicennia / mangrove / protein extraction/ phenol / salt gland-enriched tissues /1d-lc-ms/ms 
ProteomicsIntegrative analysis of genomics and proteomics data on clinical breast cancer tissue specimens extracted with acid guanidinium thiocyanate-phenol-chloroform
Acid guanidinium thiocyanate, phenol and chloroform extraction (AGPC) is a commonly used procedure to extract RNA from fresh frozen tissues and cell lines. In addition, DNA and proteins can be recovered, which makes AGPC an attractive source for integrative analysis on tissues of which little materi...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-29 | MSV000080789 | MassIVE
TranscriptomicsGene expression changes in PBMCs from metabolic syndrome patients after acute intake of phenol-rich virgin olive oil
Some studies have shown that acute intake of high-phenol virgin olive oil reduces pro-inflammatory, pro-oxidant and pro-thrombotic states, but nowadays still remains unclear if those effects attributed to its phenolic fraction could be exerted at transcriptional level in vivo. Two virgin olive oil-b...
ORGANISM(S): Homo sapiens 
2010-04-20 | E-GEOD-15812 | biostudies-arrayexpress
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