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GenomicsArabidopsis thaliana
Arabidopsis thaliana AELs phosphoprotemics Raw sequence reads
PRJNA856072 | ENA
ProteomicsEvaluation of the potential risk of Easy-nLC 1200 in phosphoproteomics
Liquid chromatography-mass spectrometry (LC-MS) is a major tool for large scale qualitative and/or quantitative analysis of protein phosphorylation in cells or tissues. Performance of LC is pivotal for the success of phosphoprotemics in both sensitivity and reproducibility. Here we report that the w...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Homo sapiens (Human) 
2023-03-10 | PXD034396 | Pride
Phosphoproteomics Lc-ms Phosphorylation 
ProteomicsDynamic phosphoprotemics yeast nitrogen down-shift
To resolve the temporal sequence of phosphorylation events responding to nutritional and chemically induced up and downshifts of TORC1 signaling in S. cerevisiae wildtype, we performed quantitative MS phosphoproteomics upon nitrogen-quality up and downshifts and rapamycin treatment. We generated a h...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-02-22 | PXD000939 | Pride
Yeast Dynamic phosphoproteomics Proline Saccharomyces cerevisiae Glutamine Nitrogen shift 
ProteomicsDynamic phosphoprotemics yeast nitrogen up-shift
To resolve the temporal sequence of phosphorylation events responding to nutritional and chemically induced up and downshifts of TORC1 signaling in S. cerevisiae wildtype, we performed quantitative MS phosphoproteomics upon nitrogen-quality up and downshifts and rapamycin treatment. We generated a h...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-02-22 | PXD000911 | Pride
Proline Dynamic phosphoproteomic Glutamine Yeast Nitrogen upshift 
UnknownMathematical modelling of the MAP kinase pathway using proteomic datasets.
Not available
S-EPMC3414524 | biostudies-literature
ProteomicsPhosphoproteomic analysis of Rhodopseudomonas palustris
This study is to compare the phosphoproteome of Rhodopseudomonas palustris under photoheterotrophic and chemoheterotrophic states
ORGANISM(S): Rhodopseudomonas palustris 
2012-12-12 | PXD000025 | Pride
Phosphoprotemics Rhodopseudomonas palustris 
UnknownProteomics and phosphoproteomics profiling in glutamatergic neurons and microglia in an iPSC model of Jansen de Vries Syndrome.
Not available
S-EPMC10350077 | biostudies-literature
Proteomicsproteomics and phosphoprotemics analysis of Ndufs4 KO and wild-type mouse brain upon rapamycin treatment
+ 2 experiments: - effect of rapamycin in Ndufs4 KO mouse --> 3 groups: WT, KO and KR (KO+RP) - effect of rapamycin in wild-type mouse --> 2 groups: WT and WR (WT+RP) + samples from whole brains homogenized in liquid nitrogen + proteins digested with trypsin. No fractionation + phosphopep...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2018-12-21 | MSV000083273 | MassIVE
ProteomicsInvestigating the effect of Aurora Kinase B inhibition in WT and CDH1 mutant primary neuron cultures
Primary cultures of mouse cerebellar granule neurons at DIV2 that were either WT or Cdh1 mutant were treated with and without the Aurora B inhibitor Barasertib and assessed by phosphoproteomic analysis
ORGANISM(S): Mus musculus (Mouse) 
2023-10-12 | PXD045116 | Pride
Phosphoprotemics Proteomics Primary neuron 
ProteomicsPhosphoproteomic analysis of hypothalamic GT1-7 neurons
To elucidate the mechanism of neuronal activation, we conducted a global quantitative phosphoproteomic analysis of hypothalamic neurons treated with Raptin or PBS. By COG analysis of the differentially expressed phosphorylation protein, we found obvious alterations of transport and catabolism, as we...
ORGANISM(S): Mus musculus (Mouse) 
2025-01-27 | PXD059980 | Pride
Phosphoprotemics Mice Gt1-7 cells 
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