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MetabolomicsChitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle.
Marine picocyanobacteria Prochlorococcus and Synechococcus, the most abundant photosynthetic cells in the oceans, are generally thought to have a primarily single-celled and free-living lifestyle. However, while studying the ability of picocyanobacteria to supplement photosynthetic car...
2024-02-21 | MTBLS5229 | MetaboLights
ProteomicsCaspofungin-induced Responses in the Planktonic Cells and Biofilms of Candida albicans
This project investigated the signature profiles of C. albicans planktonic cells and biofilms in response to caspofungin.
ORGANISM(S): Candida Albicans 
2021-01-08 | PXD023480 |
TranscriptomicsTranscription profiling of Porphyromonas gingivalis W50 cells grown in biofilm or planktonically
Transcriptomic profiling of P. gingivalis W50 biofilm grown cells to that of planktonic cells.
ORGANISM(S): Porphyromonas gingivalis 
2009-01-31 | E-TABM-467 | biostudies-arrayexpress
TranscriptomicsEscherichia coli biofilms vs planktonic culture
Transcription profile of Escherichia coli cells in biofilms under static batch culture was compared to that of E. coli cells in planktonic cultures. Both E. coli biofilm and planktonic cultures were cultivated for 18 h in 10% Luria-Bertani broth at room temperature (20 degree Celsius). Biofilms were...
ORGANISM(S): Escherichia coli K-12 
2013-12-30 | E-GEOD-24914 | biostudies-arrayexpress
ProteomicsProteomics of the periodontal pathogen Prevotella intermedia secretome in biofilm and planktonic lifestyles
Protein secretion into extracellular space is an important virulence mechanism both among Gram negative and Gram-positive bacteria. Prevotella intermedia, an important species associated with periodontitis, is known to be resistant to several antibiotics. Since P. intermedia is a part of normal oral...
ORGANISM(S): Prevotella intermedia ATCC 25611 = DSM 20706 
2022-05-19 | PXD029419 | Pride
Proteomics Virulence Planktonic Prevotella Biofilm Secretome 
TranscriptomicsTranscriptome profiling of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913
We compared genetic profiles of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913 and revealed genetic features during switch from planktonic to pellicle stage in Pseudoalteromonas sp. SM9913. mRNA profiles of Pseudoalteromonas sp. SM9913 planktonic cells, initia...
ORGANISM(S): Pseudoalteromonas sp. SM9913 
2015-11-03 | E-GEOD-74569 | biostudies-arrayexpress
TranscriptomicsEscherichia coli planktonic cultures: mono-species culture vs. mixed-species culture
Transcription profile of Escherichia coli cells in mono-species pure planktonic cultures was compared to that of E. coli cells in E. coli-Stenotrophomonas maltophilia dual-species planktonic cultures E. coli cells were separated from dual-species planktonic cultures before total RNA extraction to el...
ORGANISM(S): Escherichia coli K-12 
2013-12-30 | E-GEOD-24913 | biostudies-arrayexpress
TranscriptomicsE coli MG1655 biofilm and planktonic gene expression
Bacteria growing as surface-adherent biofilms are better able to withstand chemical and physical stresses than their unattached, planktonic counterparts. Using transcriptional profiling and quantitative PCR, we observed a previously uncharacterized gene, yjfO, to be upregulated during Escherichia co...
ORGANISM(S): Escherichia coli 
2010-06-21 | E-GEOD-18362 | biostudies-arrayexpress
ProteomicsShedding light on biofilm formation of Halobacterium salinarum R1 by SWATH-LC/MS/MS analysis of planktonic and sessile cells
Early and mature biofilm formation in the extremely halophilic euryarchaeon Halobacterium salinarum strain R1 was characterized by SWATH-LC/MS/MS. Using a simple surfactant-assisted protein solubilization protocol and one-dimensional ultrahigh performance nanoflow chromatography on the front end, 63...
ORGANISM(S): Halobacterium salinarum 
2016-09-28 | PXD003667 | Pride
Archaea Quantitation Biofilm Swath Label-free 
TranscriptomicsRNA-Seq analysis of transcriptomes of B. amyloliquefaciens FZB42 in biofilm formation and planktonic cells.
This experiment compares the transcriptomes of B. amyloliquefaciens FZB42 cells in biofilm formation and in planktonic cells focusing on transcripts that were most affected in their transcription. The aim of the experiment was determination of the highest expressed genes in both cultures using RPKM ...
ORGANISM(S): Bacillus amyloliquefaciens 
2017-03-16 | E-MTAB-4362 | biostudies-arrayexpress
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