Plant protease family

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Transcriptomics (310)
Unknown (261)
Genomics (106)
Proteomics (73)
Metabolomics (9)

Organisms

Drosophila melanogaster (205)
Homo sapiens (55)
Mus musculus (38)
Caenorhabditis elegans (18)
Arabidopsis thaliana (12)
Zea mays (7)
Sus scrofa (7)
Schizosaccharomyces pombe (4)
Saccharomyces cerevisiae (4)
Populus trichocarpa x Populus deltoides (3)
Medicago truncatula (3)
Danio rerio (3)
Lepeophtheirus salmonis (2)
mixed sample (2)
Sminthopsis crassicaudata (1)
Ixodes ricinus (1)
Waddlia chondrophila (1)
Atta vollenweideri (1)
Cyanidioschyzon merolae (1)
Allium cepa (1)
Metarhizium acridum (1)
Aplysia californica (1)
Eucalyptus grandis x Eucalyptus urophylla (1)
Cichorium intybus (1)
Populus balsamifera (1)
Vigna unguiculata (1)
Rhodospirillum rubrum (1)
Carcinus maenas (1)
Citrus reticulata (1)
Ciona intestinalis (1)

Organisms

viral metagenome (2)
Colocasia esculenta (1)

Repository

biostudies-arrayexpress (411)
pride (67)
MetaboLights (9)
ENA (5)
MassIVE (3)
PAXDB (2)
geo (1)
jPOST (1)

Tissue

Plant cell (29)
Leaf (15)
Root (7)
Whole body (7)
Cell culture (3)
Rosette (3)
Seedling (3)
Endosperm (2)
Leaf sheath (2)
Pollen (2)
Seed (2)
Shoot (2)
Anther (1)
Cell suspension culture (1)
Embryo (1)
Gametophore (1)
Gastric mucosa (1)
Inflorescence (1)
Latex (1)
Protonema (1)
Receptacle (1)
Root nodule (1)
Saliva (1)
Trichome (1)
Xylem (1)

Disease

Disease free (3)
Normal (2)
Represent tolerant CD4+ T cells that have not been activated (1)

Technology Type

Mass Spectrometry (67)
Shotgun proteomics (29)
Affinity purification coupled with mass spectrometry proteomics (19)
Bottom-up proteomics (12)
Data-dependent acquisition (9)
Mass spectrometry (6)
Mass spectrometry assay (3)
Gel-based experiment (3)
HDMSE (3)
Affinity proteomics (2)
SRM/MRM (2)
All-ion fragmentation (1)
Data-independent acquisition (1)
DiaPASEF (1)
MSE (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (8)
Illumina HiSeq 2500 (5)
NextSeq 500 (5)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
Complete Genomics (2)
Illumina Genome Analyzer IIx (2)
Axon GenePix 4000B scanning hardware (2)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - (2)
Chromium Controller (10X) (1)
FACSAria (BD) (1)
Axon GenePix 4000A scanning hardware (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina NovaSeq X (1)
10x Genomics Chromium Controller (1)
NextSeq 2000 (1)
Illumina HiSeq 1000 (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
LTQ (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Orbitrap Fusion (Thermo Fisher Scientific)_negative (1)
Orbitrap Fusion (Thermo Fisher Scientific) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2013 (122)
2011 (112)
2010 (45)
2015 (23)
2014 (20)
2025 (19)
2012 (16)
2023 (13)
2026 (12)
2021 (12)
2020 (12)
2022 (12)
2005 (11)
2006 (10)
2024 (9)
2016 (9)
2008 (9)
2018 (7)
2017 (6)
2009 (6)
2007 (4)
2019 (2)
2004 (2)
2002 (1)

UNIPROT ID/AC

14331_ORYSJ (1)
14332_ORYSJ (1)
14333_ORYSJ (1)
14334_ORYSJ (1)
14335_ORYSJ (1)
14336_ORYSJ (1)
14337_ORYSJ (1)
40C1_ORYSJ (1)
40G2_ORYSJ (1)
65489.OBART01G05830.1 (1)
65489.OBART01G12280.1 (1)
65489.OBART01G35120.1 (1)
65489.OBART03G02780.1 (1)
65489.OBART04G08210.1 (1)
65489.OBART04G23010.1 (1)
65489.OBART04G25560.1 (1)
65489.OBART05G19430.1 (1)
65489.OBART06G24180.1 (1)
65489.OBART06G26430.1 (1)
65489.OBART07G18050.1 (1)
65489.OBART08G10770.1 (1)
65489.OBART09G18960.1 (1)
65489.OBART09G20080.1 (1)
65489.OBART10G12670.1 (1)
65489.OBART11G11440.1 (1)
6PGD1_ORYSJ (1)
6PGD2_ORYSJ (1)
6PGL3_ORYSJ (1)
6PGL4_ORYSJ (1)
A0A0D3EIN4_9ORYZ (1)

CHEBI ID

CHEBI:64549 (2)
CHEBI:64561 (2)
CHEBI:64566 (2)
CHEBI:28527 (2)
CHEBI:28875 (2)
CHEBI:17818 (2)
CHEBI:15756 (2)
CHEBI:28044 (2)
CHEBI:167610 (1)
CHEBI:74904 (1)
CHEBI18107 (1)
CHEBI17895 (1)
CHEBI15724 (1)
CHEBI545687 (1)
CHEBI17748 (1)
CHEBI18386 (1)
CHEBI32816 (1)
CHEBI18183 (1)
CHEBI17310 (1)
CHEBI15544 (1)
CHEBI74767 (1)
CHEBI17385 (1)
CHEBI21563 (1)
CHEBI17768 (1)
CHEBI21560 (1)
CHEBI16259 (1)
CHEBI16543 (1)
CHEBI16437 (1)
CHEBI40410 (1)
CHEBI17533 (1)

Metabolite Name

Spermidine (2)
N-Acetylputrescine (2)
Choline (2)
Palmitic acid (2)
Malic acid (2)
Tryptophan (2)
Phenylalanine (2)
3-methylvalerate (1)
2-methylbutyrate (1)
Isocaproate (1)
N-AcetylProline (1)
DL-O-Tyrosine (1)
3-Hydroxyproline (1)
?-Muricholic acid (1)
?-Hydroxyisovaleric acid (1)
Sugar alcohol (C6) (1)
Nicotine amide (1)
3-Indoxylsulfuric acid (1)
4-hydroxy-5-(2-oxo-l-pyrrolidinyl)-benzoic Acid (1)
Vitexin-2"-O-galactoside (1)
Epicatechin-3'-O-beta-D-glucopyranoside (1)
Kaempferol-3-O-(2-O-Xylosyl-6-O-Rhamnosyl)Glucoside (1)
9S-Hydroxy-10E,12Z-octadecadienoic acid (1)
Vitexin-2''-O-glucoside (1)
Acacetin-7-O-galactoside (1)
Isovitexin-8-O-xylcoside (1)
5-Hydroxy-6,7,3',4'-tetramethoxyflavone (1)
Kaempferol-3,7-O-dirhamnoside (Kaempferitrin) (1)
Kaempferol-3-O-robinobioside (Biorobin) (1)
Tricin-7-O-saccharic acid (1)

First Public Date

2020 (2)
2023 (1)
2022 (1)
2016 (1)

Study type

ChIP-chip by tiling array (134)
Transcription profiling by array (107)
ChIP-seq (98)
RNA-seq of coding RNA (24)
ChIP-chip by array (12)
RNA-seq of coding RNA from single cells (7)
Unknown experiment type (5)
Comparative genomic hybridization by array (4)
Other (2)
DNA-seq (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
Animal - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
Translation profiling (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Genotyping by array (1)
Bisulfite-seq (1)
ATAC-seq (1)
Ribo-seq (1)
Single nucleus RNA sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2013 (133)
2011 (120)
2010 (50)
2023 (36)
2015 (34)
2025 (31)
2014 (27)
2019 (23)
2012 (23)
2022 (23)
2021 (21)
2016 (21)
2024 (20)
2020 (14)
2017 (14)
2005 (14)
2018 (13)
2009 (12)
2006 (12)
2008 (11)
2026 (5)
2007 (5)
2001 (4)
2004 (2)
2003 (2)
2002 (1)
1999 (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (5)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (2)
College of Horticulture, China Agricultural University, Beijing 100193, China (2)
Forschungszentrum Juelich GmbH ZEA-3 Analytics (2)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (2)
Leibniz Institute of Plant Biochemistry (2)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Applied Proteomics Laboratory, Department of Biology, Maynooth University, Ireland. (1)
Auburn University, Alabama (1)
BOKU University, Department of Agricultural Sciences, Institute of Environmental Biotechnology (1)
Biomedical Research Center, Slovak Academy of Sciences (1)
Carnegie Institution at Stanford (1)
Carnegie Mass Spec Facility (1)
Carnegie Mass Spectrometry Facility at Stanford (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Cornell University (1)
Department of Biology, Maynooth University, Co. Kildare,Ireland (1)
Department of Biology,Washington University in St. Louis (1)
Department of Biosciences, University of Durham, South Road, Durham, DH1 3LE, UK (1)
Department of Experimental Plant Biology, Faculty of Science, Charles University, Vinicna 5, 128 44 Prague 2, Czech Republic (1)
Department of Plant Systems Biology, University of Hohenheim, 70593 Stuttgart, Germany (1)
Director | ARC CoE Plant Energy Biology, The University of Western Australia (1)
Division of Chemical and Life Sciences & Engineering 4700 King Abdullah University of Science and Technology (KAUST) (1)
Division of Plant Sciences, University of Dundee at JHI, Scotland, UK (1)
Dpt Biochemistry and Molecular Biology and Agrochemistry and Soil Science, University of Alicante, SPAIN (1)
EDyP (1)
Group Leader Dept. CRop Genetics John Innes Centre JIC Norwich Research Park Norwich, UK (1)
Institute of Physiology II Universität Freiburg Germany (1)
Institute of Plant Sciences, University of Bern, Bern, Switzerland (1)
Institute of Science and Technology, Austria, Klosterneuburg. (1)

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Perception of a conserved family of plant signaling peptides by the receptor kinase HSL3

Plant genomes encode hundreds of secreted peptides; however, relatively few have been characterised. We report here an uncharacterised, stress-induced family of plant signalling peptides, which we call CTNIPs. Based on the role of the common co-receptor BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED KINAS...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2022-06-10 | PXD029264 | Pride

The genetic origin of evolidine, the first cyclopeptide discovered in plants, and related orbitides

Cyclic peptides are reported to have antibacterial, antifungal and other bioactivities. Orbitides are a class of cyclic peptide that are small, head-to-tail cyclized, composed of proteinogenic amino acids, and lack disulfide bonds; they are also known in several genera of the plant family Rutacea...

2020-10-14 | MTBLS1963 | MetaboLights

A new principle of oligomerization of plant DEG7 protease based on interactions of degenerated protease domains.

Not available

S-EPMC3194040 | biostudies-literature

The transcriptome, extracellular proteome and active secretome of agroinfiltrated N. benthamiana uncover an expanded protease repertoire

Background: The infiltration of disarmed Agrobacterium tumefaciens into leaves of Nicotiana benthamiana (agroinfiltration) is a widely-adopted procedure to produce and study proteins in plant science, for instance to determine subcellular localization and protein-protein interactions. Agroinfiltrati...

ORGANISM(S): Agrobacterium fabrum str. C58 Nicotiana benthamiana

2017-10-24 | PXD006708 | Pride

Activity-based proteomics Rnaseq Agroinfiltration Extracellular proteome Post-translational activation Silencing inhibitor p19 Plant immunity Nicotiana benthamiana Activity-based protein profiling (abpp) Agrobacterium tumefaciens Plant protease family Plant protease annotation Chlorosis

Increased cysteine protease activity in the aphid midgut decreases the transmission efficiency of a circulative plant virus

Aphids, sap-sucking insects in the order Hemiptera, are among the most prolific insect vectors of plant viruses Plant viruses from the family Luteoviridae are transmitted exclusively by aphids in a circulative manner and cause significant crop yield losses. Circulative plant viruses must cross the a...

ORGANISM(S): Myzus persicae persicae

2016-12-14 | PXD004893 | Pride

Host-pathogen interactions Lc-msms Luteoviridae Potato leafroll virus 2d-dige

The rust transferred proteins-a new family of effector proteins exhibiting protease inhibitor function.

Not available

S-EPMC6638633 | biostudies-literature

The family of Deg/HtrA proteases in plants.

Not available

S-EPMC3473262 | biostudies-literature

TK03_Proteome_Soybean

Proteomic analysis of the effect of plant-derived smoke on soybean during recovery after flooding stress

ORGANISM(S): Glycine Max

2018-06-13 | PXD008603 | JPOST Repository

Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family.

Not available

S-EPMC4130198 | biostudies-literature

Protease gene families in Populus and Arabidopsis.

Not available

S-EPMC1780054 | biostudies-literature

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760 Results

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Organisms

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Disease

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