Plantation - OmicsDI

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Unknown (1649)
Genomics (570)
Transcriptomics (21)
Proteomics (10)
Metabolomics (8)
Methylation profiling (2)
Other (1)

Organisms

Schizophyllum commune H4-8 (8)
Mycobacterium tuberculosis SP7 (8)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 (8)
Oryza sativa Japonica Group (8)
Rabbit calicivirus (8)
Crotalus durissus terrificus (8)
Eriocheir sinensis (8)
Moniliophthora perniciosa (4)
Populus tomentosa (3)
Elaeis guineensis (3)
Homo sapiens (3)
Pinus radiata (2)
Eucalyptus nitens (2)
Populus x canadensis (2)
Arabidopsis thaliana (2)
Camellia sinensis (1)
Populus trichocarpa (1)
Oryza sativa Japonica Group (1)
Oryza sativa Indica Group (1)
Populus trichocarpa x Populus deltoides (1)
Populus euphratica (1)
Eukaryota (1)
Archaea (1)
Viruses (1)
uncultured soil microorganism (1)
Bacteria (1)
Eucalyptus urophylla (1)
Vitis vinifera (1)
Populus tremula x Populus alba (1)
Saccharum sp. (1)

Organisms

soil metagenome (103)
root metagenome (13)
Elaeis guineensis (9)
Camellia sinensis (5)
Bacteria (4)
Homo sapiens (4)
Saimiri boliviensis (3)
leaf litter metagenome (3)
Falcataria moluccana (3)
Musa acuminata AAA Group (3)
rhizosphere metagenome (3)
Moniliophthora perniciosa (2)
Helopeltis bradyi (2)
Didymella sp. ZC-2020a (2)
Didymella segeticola (2)
Pinus radiata (2)
Phytophthora meadii (2)
Hevea brasiliensis (2)
Areca catechu (2)
groundwater metagenome (2)
plant metagenome (2)
Vitis vinifera (2)
Bacillus velezensis (2)
Sinomonas puerhi (1)
Sucra jujuba (1)
Paraburkholderia sacchari (1)
Gordonia polyisoprenivorans VH2 (1)
Ganoderma tornatum NPG1 (1)
Ganoderma zonatum POR69 (1)
Ganoderma miniatocinctum 337035 (1)

Repository

ENA (566)
biostudies-arrayexpress (14)
geo (12)
pride (8)
MetaboLights (7)
EGA (1)
EVA (1)
GNPS (1)
jPOST (1)
MassIVE (1)

Tissue

Endosperm (1)
Soil (1)
Plant cell (1)
Macrophage (1)
Leaf (1)
Cell culture (1)

Disease

Amyotrophic lateral sclerosis (1)

Technology Type

Mass Spectrometry (8)
Mass spectrometry (5)
Shotgun proteomics (5)
Mass spectrometry assay (2)
Data-independent acquisition (1)
Gel-based experiment (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
Hydro reverse-phase (RP) high-performance liquid chromatography (HPLC) followed by ionization by electrospray in negative mode on an Orbitrap mass spectrometer (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
NEG_UPLC-QTOF-MS (1)
POS_UPLC-QTOF-MS (1)
6540 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2014 (6)
2010 (5)
2020 (5)
2025 (5)
2022 (4)
2017 (3)
2018 (2)
2015 (2)
2013 (2)
2023 (2)
2021 (2)
2008 (2)
2016 (1)
2012 (1)
2019 (1)
2026 (1)
2024 (1)

CHEBI ID

CHEBI:138086 (1)
CHEBI:138082 (1)
CHEBI:138080 (1)
CHEBI:90283 (1)
CHEBI:90275 (1)
CHEBI:90280 (1)
CHEBI:3594 (1)
CHEBI:138083 (1)
CHEBI:6358 (1)
CHEBI:16220 (1)
CHEBI:138081 (1)
CHEBI:138085 (1)
CHEBI:520 (1)
CHEBI:77439 (1)
CHEBI:131743 (1)
CHEBI:133145 (1)
CHEBI:38257 (1)
CHEBI:18186 (1)
CHEBI:16112 (1)
CHEBI:28044 (1)
CHEBI:7916 (1)
CHEBI:27897 (1)

Metabolite Name

Agmatine (2)
Cholesterol 3-sulfate (2)
Heptadecanoic acid (2)
Betaine (2)
Myristoleic acid (2)
Diethanolamine (2)
DL-2-Aminoadipic acid (2)
Choline (2)
Pentadecanoic Acid (2)
L-Carnitine (2)
"Ethanol, 2-[2-(2-butoxyethoxy)ethoxy]-" (1)
"1,2-Di-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine" (1)
"Benzoic acid, 3-amino-" (1)
"Acetic acid, 2,2'-[oxybis(2,1-ethanediyloxy)]bis-" (1)
"N,N'-Diacetylchitobiose" (1)
PyroGlu-Arg-Arg (1)
Taurochenodeoxycholate / Taurodeoxycholic acid (1)
Oleic acid / trans-Vaccenic acid (1)
"N,N-Dimethylsphingosine" (1)
"Acetic acid, methoxy-, methyl ester" (1)
"1,3-Diaminopropane" (1)
N-Octadecanoyl-1-.beta.-galactosyl-sphing-4-enine (1)
"Adenine, N6-methyl" (1)
"Ethanol, 2-[2-(2-methoxyethoxy)ethoxy]-" (1)
Val-Arg-Arg (1)
Cys-Val-Arg (1)
"1,2-Benzenedicarboxylic acid" (1)
1-Hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-rac-glycerol) (1)
"Piperazine-N,N'-bis(2-hydroxypropanesulfonic acid)" (1)
"all cis-(6,9,12)-Linolenic acid" (1)

First Public Date

2023 (89)
2026 (68)
2024 (67)
2025 (62)
2020 (59)
2022 (58)
2021 (43)
2019 (35)
2018 (32)
2014 (14)
2017 (13)
2013 (10)
2015 (9)
2016 (6)
2012 (1)

Classification

bacteria (3)

Study type

Transcription profiling by array (10)
RNA-seq of coding RNA (2)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (195)
2021 (172)
2023 (156)
2025 (125)
2020 (124)
2024 (123)
2018 (116)
2019 (104)
2016 (91)
2017 (74)
2015 (68)
2014 (61)
2013 (40)
2011 (36)
2012 (32)
2009 (27)
2010 (22)
2007 (21)
2026 (20)
2008 (20)
2006 (10)
2004 (10)
2005 (6)
2003 (3)
2002 (3)
2000 (3)
1999 (1)

Lab affiliation

Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
Professor of Neurology UMass Chan Medical School Albert Sherman Center, AS6-1057 368 Plantation Dr. Worcester, MA 01605 (1)
Instituto de Ecología, A.C., (1)
Department of Microbiology and Physiological Systems UMass Chan Medical School 368 Plantation Street Worcester, MA 01655 (1)
Universidade Estadual Paulista Department of Technology Jaboticabal, SP, Brazil (1)
Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (1)
Associate Professor and Head-Proteomics Research, School of Biotechnology, Amrita Vishwa Vidyapeetham, Amritapuri Campus, Clappana P.O, Kollam - 690525 Kerala, India, Phone-0476-2803119, 2803110 (1)
Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China (1)

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Comparative analysis of rhizosphere soil between three plantation types in Karst Rocky Desertification area by widely targeted metabolomics

Understanding the differences in rhizosphere soil microbial metabolites between severely and mildly rocky desertified areas is crucial for developing ecological restoration strategies and land management measures in rocky desertification regions. This study systematically analyzed the differences...

2025-02-24 | MTBLS11482 | MetaboLights

tea plantation soil

tea plantation soil Assembly

PRJNA1061320 | ENA

tea plantation soil microbe

tea plantation soil microbe Raw sequence reads

PRJNA1353616 | ENA

Vertical Stratification of P Pools in Subtropical Plantation Soils under Fertilization and Dry–Season Irrigation: Multiomics Regulatory Strategies

The rapid expansion of fast-growing plantations in subtropical regions is closely linked to dry-season irrigation and fertilization; however, improper practices often lead to soil acidification and reduced nutrient bioavailability. Phosphorus (P), one of the most critical elements for plantation tre...

ORGANISM(S): soil metagenome

2025-12-09 | PXD070738 | Pride

Korean pine plantation soil fungus genome

Korean pine plantation soil fungus genome Raw sequence reads

PRJNA938591 | ENA

microbial community from different tea plantation

microbial community from different tea plantation Raw sequence reads

PRJNA551933 | ENA

Genome-wide epigenetic analysis of Japanese immigrant plantation workers with Parkinson’s Disease

Parkinson’s Disease (PD) is a disease of the central nervous system that progressively affects the motor system. Epidemiological studies have provided evidence that exposure to agriculture-related occupations or agrichemicals elevate a person’s risk for PD. Here, we sought to examine the possible ep...

ORGANISM(S): Homo sapiens

2020-05-29 | GSE151355 | GEO

Plantation Soil

Plantation Soil Raw sequence reads

PRJNA810248 | ENA

Eucalyptus-legume mixed plantation soil metagenome

Eucalyptus-legume mixed plantation soil metagenome Metagenome

PRJNA1506819 | ENA

Fujian tea plantation soils - Lab cultivation experiment

Fujian tea plantation soil microcosm metagenome under laboratory cultivation

PRJNA1262000 | ENA

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