Ppi network - OmicsDI

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Organisms

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Mus (1)
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Organisms

Homo sapiens (78)
Mus musculus (30)
Rattus norvegicus (10)
Saccharomyces cerevisiae (6)
Ovis aries (4)
Gallus gallus (3)
Oryctolagus cuniculus (2)
Caenorhabditis elegans (2)
Sus scrofa (2)
Hippocampus (1)
Burkholderia thailandensis (1)
Human immunodeficiency virus (1)
Ailuropoda melanoleuca (1)
Oncorhynchus mykiss (1)
Mus (1)
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Bos taurus (1)

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2018 (5)
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UNIPROT ID/AC

Q01813 (2)
P14618 (2)
P17858 (2)
P21439 (2)
P05062 (2)
P09972 (2)
P04075 (2)
P07738 (2)
P00338 (2)
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B0M0N9 (1)

CHEBI ID

CHEBI:57692 (7)
CHEBI:597326 (7)
CHEBI:17154 (7)
CHEBI:29105 (7)
CHEBI:17790 (7)
CHEBI:18191 (7)
CHEBI:18304 (7)
CHEBI:29033 (7)
CHEBI:15905 (7)
CHEBI:28938 (7)
CHEBI:17544 (7)
CHEBI:4167 (7)
CHEBI:29101 (7)
CHEBI:16828 (7)
CHEBI:17196 (7)
CHEBI:17232 (7)
CHEBI:16189 (7)
CHEBI:15971 (7)
CHEBI:17203 (7)
CHEBI:17013 (7)
CHEBI:16040 (7)
CHEBI:17568 (7)
CHEBI:17748 (7)
CHEBI:16750 (7)
CHEBI:17369 (7)
CHEBI:17562 (7)
CHEBI:15698 (7)
CHEBI:17561 (7)
CHEBI:16958 (7)
CHEBI:16704 (7)

Metabolite Name

HMF (1)
Coenzyme Q9 (coenzyme Q9) (1)
Reduced coenzyme Q9 (coenzyme Q9H2) (1)
Coenzyme Q10 (coenzyme Q10) (1)
Reduced coenzyme Q10 (coenzyme Q10H2) (1)

First Public Date

2025 (37)
2024 (34)
2026 (28)
2023 (25)
2022 (23)
2021 (21)
2020 (12)
2019 (6)
2017 (2)
2015 (2)
2014 (2)
2018 (1)

Modelling Approach

Constraint-based model (5)
Other (2)
Metabolic network (2)

Lab affiliation

1 Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, China 2 Department of Toxicology, Fujian Center for Evaluation of New Drug, Fujian Medical University, Fuzhou, China (4)
Basilbiotech, Incheon 22002, Republic of Korea. (2)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (2)
Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf Germany (2)
Institute of Molecular Biology (IMB) (2)
Key Laboratory of Rare and Uncommon Diseases, Department of Microbiology, Institute of Basic Medicine, Shandong First Medical University & Shandong Academy of Medical Sciences (2)
Lanzhou Veterinary Research Institute (2)
Qingdao Agricultural University (2)
Shandong Academy of Agricultural Sciences, Jinan, Shandong, China (2)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (2)
Traditional Chinese Medicine Hospital Affiliated to Xinjiang Medical University (2)
Univ. Lille, Inserm, CHU Lille, U1192 - Protéomique Réponse Inflammatoire Spectrométrie de Masse - PRISM, F-59000 Lille, France (2)
1Department of Parasitology of Zhongshan School of Medicine, Sun Yat-sen University, No.74 Zhongshan Road.2, Guangzhou, Guangdong, 510080, China. 2Key Laboratory of Tropical Disease Control (SYSU), Ministry of Education, Guangzhou, Guangdong, 510080, China. 3Provincial Engineering Technology Research Center for Biological Vector Control, Guangzhou, Guangdong, 510080, China. (1)
1Departments of Medicine & 2Pathology, Case Western Reserve University and University Hospitals Case Medical Center; 3Department of Molecular Biology & Microbiology Case Western Reserve University School of Medicine, Cleveland, Ohio 44106,USA. (1)
2Collaborative Center for Translational Mass Spectrometry, Translational Genomics Research Institute, Phoenix, AZ, USA (1)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (1)
Affiliated Chuzhou Hospital of Anhui Medical University (1)
Agriculture and Agri-Food Canada, Ottawa Research and Development Centre (1)
Anhui Agricultural University,China (1)
Ashoka University, Rajiv Gandhi Education City Sonipat, Haryana, India – 131029 (1)
Assistant Professor, Mass spectrometry Facility, Canadian Centre for Health and Safety in Agriculture, College of Medine, University of Saskatchewan. (1)
Associate Professor of Neurology Institute for Cell Engineering Johns Hopkins University School of Medicine (1)
Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, China (1)
Bengbu medical college (1)
Bowling Green State University (1)
CHU Angers, Angers, France Inserm UMR 1307, CNRS UMR 6075, Université de Nantes, CRCI2NA, Université d'Angers, Angers, France (1)
Capital Institute of Pediatrics (1)
Capital Institute of Pediatrics, Beijing (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (1)
Center for Bioanalysis, Division of Chemical and Medical Metrology, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea (1)

IsPrivate

False (9)

Submitter Keywords

FROG (3)
Not Peer Reviewed (1)

Classification

viruses (1)
bacteria (1)

Modification

6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (10)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Bisulfite-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (1336)
2021 (1000)
2023 (922)
2025 (913)
2024 (728)
2020 (655)
2019 (386)
2018 (253)
2017 (171)
2016 (92)
2014 (80)
2015 (76)
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2013 (51)
2012 (36)
2011 (26)
2010 (21)
2009 (14)
2008 (11)
2007 (9)

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Clinacanthus nutans fractions exert anti-nasopharyngeal carcinoma effects: integrating untargeted metabolomics, network pharmacology, molecular docking and experimental validation

Background: Clinacanthus nutans (C. nutans), a Southeast Asian medicinal herb, has ethnopharmacological potential against nasopharyngeal carcinoma (NPC). This study aimed to elucidate the bioactive compounds, potential molecular targets, and regulatory pathways responsible for the anticancer acti...

2026-01-05 | MTBLS13610 | MetaboLights

Integrating Large-Scale Functional Genomic Data to Dissect the Complexity of Yeast Regulatory Networks

A major goal of biology is the construction of networks that predict complex system behavior. We combine multiple types of molecular data, including genotypic, expression, transcription factor binding site (TFBS), and protein-protein interaction (PPI) data previously generated from a number of yeas...

ORGANISM(S): Saccharomyces cerevisiae

2008-06-15 | E-GEOD-11111 | biostudies-arrayexpress

Protein-Protein Interaction (PPI) Network of Zebrafish Oestrogen Receptors: A Bioinformatics Workflow.

Not available

S-EPMC9143887 | biostudies-literature

MTGO: PPI Network Analysis Via Topological and Functional Module Identification.

Not available

S-EPMC5882952 | biostudies-literature

Protein Function Prediction Based on PPI Networks: Network Reconstruction vs Edge Enrichment.

Not available

S-EPMC8712557 | biostudies-literature

Connectedness of PPI network neighborhoods identifies regulatory hub proteins.