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TranscriptomicsTranscription profiling of Arabidopsis leaf tissues and protoplasts in response to Plum pox virus infection
Virus infection induces activation and suppression of global gene expression in the host. Profiling gene expression changes in the host may provide insights into the molecular mechanisms that underlie host physiological and phenotypic responses to virus infection. In this study, the Arabidopsis Affy...
ORGANISM(S): Arabidopsis thaliana 
2008-11-07 | E-GEOD-11217 | biostudies-arrayexpress
ProteomicsCherry Adapted Plum Pox Virus (PPV) CR Isolate Alters the Abundance of Proteins Involved in Photosynthesis and Stress-response of the Experimental Herbaceous Host Nicotiana benthamiana More Aggressively than the Mild PPV-C Isolate
Plum pox virus (PPV, family Potyviridae) is one of the most important viral pathogens of Prunus spp. causing considerable damage to stone-fruit industry worldwide each year. Among the PPV strains identified so far, only PPV-C and PPV-CR are able to infect cherries under natural conditions. Herein, w...
ORGANISM(S): Nicotiana benthamiana Plum pox virus 
2018-08-13 | PXD010018 | Pride
Tobacco Lc-ms Compatible interaction Photosynthesis Sharka Ppv Label-free quantification Antioxidants 
TranscriptomicssRNA sequencing to study assorted processing of synthetic trans-acting siRNAs and its activity in antiviral resistance
The use of syn-tasiRNAs has been proposed as an RNA interference technique alternative to those previously described: hairpin based, virus induced gene silencing or artificial miRNAs. In this study we engineered the TAS1c locus to impair Plum pox virus (PPV) infection by replacing the five native si...
ORGANISM(S): Nicotiana benthamiana 
2015-06-17 | E-GEOD-69348 | biostudies-arrayexpress
ProteomicsCommon and strain-specific post-translational modifications of the potyvirus Plum pox virus coat protein in different hosts
Phosphorylation and O-GlcNAcylation are widespread post-translational modifications (PTMs) often sharing protein targets. Numerous studies have reported phosphorylation of plant virus proteins. In plants, research on O-GlcNAcylation lags behind regarding other eukaryotes and information about O-GlcN...
ORGANISM(S): Plum pox virus 
2020-05-27 | PXD017780 | Pride
Capsid protein  o-glcnacylation  phosphorylation  sharka  potyvirus 
GenomicsPrunus viruses
Prunus viruses: PPV, PDV, PNRSV
PRJEB110471 | ENA
TranscriptomicsNew methods to analyse microarray data that partially lack a reference signal.
ABSTRACT: BACKGROUND: Microarray-based Comparative Genomic Hybridisation (CGH) has been used to assess genetic variability between bacterial strains. Crucial for interpretation of microarray data is the availability of a reference to compare signal intensities to reliably determine presence or diver...
ORGANISM(S): Staphylococcus aureus 
2010-01-20 | E-BUGS-85 | biostudies-arrayexpress
GenomicsSus scrofa
Transcriptome sequencing in PTCs during PPV infection
PRJNA488836 | ENA
TranscriptomicsTranscriptomic analysis of Nicotiana benthamiana plants infected with a plum pox virus (PPV) deletion mutant (P1Pro) that lacks the self-cleavage inhibitory domain of the P1 leader protease
Transcriptomes of wild-type Nicotiana benthamiana plants inoculated with plum pox virus (PPV) or the P1Pro clone, a PPV deletion mutant that lacks the self-cleavage inhibitory domain of the P1 leader protease; in addition, N. benthamiana nahG-expressing plants inoculated with P1Pro were analyzed to ...
ORGANISM(S): Nicotiana benthamiana 
2020-07-30 | GSE146746 | GEO
UnknownInterpreting PPV and NPV of Diagnostic Tests with Uncertain Prevalence.
Not available
S-EPMC11294685 | biostudies-literature
UnknownDual role of PpV in Drosophila crystal cell proliferation and survival.
Not available
S-EPMC11927399 | biostudies-literature
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