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MetabolomicsA Python-based pipeline for preprocessing LC-MS data for untargeted metabolomics workflows
Preprocessing data in a reproducible and robust way is one of the current challenges in untargeted metabolomics workflows. Data curation in liquid chromatography-mass spectrometry (LC-MS) involves the removal of unwanted features (retention time; m/z pairs) to retain only high-quality data for subse...
2020-11-21 | MTBLS1919 | MetaboLights
TranscriptomicsA data-driven approach to preprocessing Illumina 450K methylation array data
Background: As the most stable and experimentally accessible epigenetic mark, DNA methylation is of great interest to the research community. The landscape of DNA methylation across tissues, through development and in disease pathogenesis is not yet well characterised. Thus there is a need for rapid...
ORGANISM(S): Homo sapiens 
2013-01-24 | E-GEOD-43414 | biostudies-arrayexpress
TranscriptomicsConsensus Preprocessing of GEO and ArrayExpress Normal and Diseased Lung Tissue Microarray Data
The Affymetrix oligonucleotide microarrays measure gene expression by quantifying intensity of fluorescently labeled gene fragments that bind to sets of 25-mer oligonucleotide probes on the chip with specific sequences tailored to be complementary to the target genes. Each gene is associated with a ...
ORGANISM(S): Homo sapiens 
2014-09-18 | GSE60486 | GEO
GenomicsComparing preprocessing strategies for 3D-Gene microarray data of extracellular vesicle-derived miRNAs
Comparing preprocessing strategies for 3D-Gene microarray data of extracellular vesicle-derived miRNAs
PRJNA1066251 | ENA
TranscriptomicsGenome-wide Expression Assay Comparison Across Frozen and Fixed Postmortem Brain Tissue Samples
Comparison between in vitro transcription- and cDNA-mediated annealing, selection and ligation (DASL)-based assays on brain-specific reference RNA, and postmortem frozen and formalin fixed brain tissue from autistic and control cases. Investigation of data preprocessing techniques for DASL-assayed ...
ORGANISM(S): Homo sapiens 
2012-04-02 | E-GEOD-28475 | biostudies-arrayexpress
UnknownFuNP (Fusion of Neuroimaging Preprocessing) Pipelines: A Fully Automated Preprocessing Software for Functional Magnetic Resonance Imaging.
Not available
S-EPMC6378808 | biostudies-literature
UnknownAffymetrix GeneChip microarray preprocessing for multivariate analyses.
Not available
S-EPMC3431718 | biostudies-literature
UnknownfMRIPrep: a robust preprocessing pipeline for functional MRI.
Not available
S-EPMC6319393 | biostudies-literature
UnknownA framework for oligonucleotide microarray preprocessing.
Not available
S-EPMC2944196 | biostudies-literature
ProteomicsTurboRAW2MGF: Removing isobaric-related ions improves the peptide/protein identification
Isobaric labelling technique coupled with high resolution mass spectrometry has been widely employed in the proteomics workflows requiring relative quantification. For each high resolution tandem mass spectrum (MS/MS), it can be used not only to quantify the peptide from different samples by reporte...
ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat) 
2015-01-30 | PXD000994 | Pride
Isobaric labelling Ltq-orbitrap Preprocessing Peptide identification Itraq 
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