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ProteomicsDNA pulldown of PRDM16 promoter and measurement of LC/MS-MS
To further investigate the transcription cofactor of Smad3 that regulated the transcription of PRDM16, we conducted DNA pull-down assay. we treated HK-2 cells with TGF-β and extracted the nuclear proteins. And the nuclear proteins were incubated with streptavidin magnetic beads, and biotin-labeled D...
ORGANISM(S): Homo sapiens (Human) 
2025-07-14 | PXD044753 | Pride
Hk-2 cell line dna pull-down lc/ms-ms 
ProteomicsIdentification of potential Rsf1 promoter-interacting proteins in rice (Oryza sativa Nipponbare) roots during nematode infection
We performed DNA-pull down experiments using biotin-labeled and unlabeled promoter sequences of Rsf1, a susceptibility factor in rice against root-knot nematode infection, to capture interacting nuclear proteins from rice roots at different time points post-infection (0, 1, and 3 days). Captured pro...
ORGANISM(S): Oryza sativa (Rice) 
2025-12-07 | PXD071646 | Pride
Lc-ms/ms Nuclear proteins. Promoter pull-down Root-knot nematode Dna-protein interaction Rice 
ProteomicsProtein idetification by using DNA pull-down & MS assay
Identification of proteins binding to the promoter of hrpR gene in Pseudomonas syringae using DNA pull-down & MS assay
ORGANISM(S): Pseudomonas syringae pv. actinidiae str. Shaanxi_M228 
2021-03-23 | PXD023722 | Pride
Promoter Dna pull-down Lc-ms/ms 
ProteomicsThe transcription factors regulated upstream of the IFI44L gene were screened by DNA pull-down, mass spectrometry combined with bioinformatics methods
Proteins bound to the IFI44L promoter were screened through DNA pull-down and mass spectrometry, and further proteins with transcriptional functions were screened through bioinformatics.
ORGANISM(S): Homo sapiens (Human) 
2026-02-09 | PXD065618 | Pride
Ifi44l lc-ms 
ProteomicsDNA pull-down and mass spectrometry
DNA pull-down and mass spectrometry analysis were performed by utilizing a biotin-labeled human PDPN promoter.
ORGANISM(S): Homo sapiens (Human) 
2026-03-13 | PXD067543 | Pride
Human nasal epithelial cells Coomassie brilliant blue staining Lc-ms Dna pulldown 
GenomicsProteomic and Genomic Analysis of transcription factor TFII-I reveals insight into the response to cellular stress
We expressed biotin-tagged transcription factor TFII-I (GTF2I) in K562 cells and subjected crosslinked chromatin to streptavidin mediated pull down. We subjected the isolated DNA to Illumina sequencing. We identified 18920 TFII-I binding peaks. Nearest gene analysis revealed 5886 genes associated w...
ORGANISM(S): Homo sapiens 
2014-05-14 | E-GEOD-51065 | biostudies-arrayexpress
ProteomicsProteome of Francisella novicida U112 in exponential and stationary growth phase and co-IPs with cas12 promoter or MtvS1-His as bait
Whole cell lysate proteome of Francisella novicida U112 in exponential and stationary growth phase and pulldown experiments with cas12 promoter DNA or MtvS1-His as bait.
ORGANISM(S): Francisella tularensis subsp. novicida (strain U112) Bacteria 
2026-07-13 | PXD068088 | Pride
Mtvs1 Francisella Exponental phase Stationary phase 
ProteomicsDNA pull down-MS reveals transcription factors that ineracted with THRA promoter in AC16 cell
This study was conducted by using DNA pull down-MS to identify transcription factors that ineracted with THRA promoter.
ORGANISM(S): Homo Sapiens 
PXD064078 |
ProteomicsDNA pull down between WT and nos
DNA pull down was performed to identify icaA promoter-bound proteins
ORGANISM(S): Staphylococcus Aureus 
2024-10-30 | PXD057339 |
GenomicsMapping microRNA-target interactions in cell lines with Spy3-AGO2 Pull-down [mESC SAP-seq]
Mapping microRNA-target interactions in cell lines with Spy3-AGO2 Pull-down [mESC SAP-seq]
PRJNA1223882 | ENA
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