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ProteomicsMulti-omic analysis of gametogenesis reveals a novel signature at the promoters and distal enhancers of active genes
Epigenetic regulation of gene expression is tightly controlled by the dynamic modification of histones by chemical groups, the diversity of which has largely expanded over the past decade with the discovery of lysine acylations, catalyzed from acyl-coenzymes A. Here, we investigated the dynamics of ...
ORGANISM(S): Mus musculus (Mouse) Saccharomyces cerevisiae (Baker's yeast) 
2020-03-26 | PXD015380 | Pride
Promoters and enhancers Omics data integration Crotonylation Mouse spermatogenesis Histones 
TranscriptomicsTranscription Initiation Platforms and GTF recruitment at tissue-specific enhancers and promoters
Recent works have shown that RNA Polymerase (Pol) II can be recruited to, and transcribe, distal regulatory regions. Here, we analyzed transcription initiation and elongation through genome-wide localization of Pol II, General Transcription Factors (GTFs) and active chromatin in developing T-cells. ...
ORGANISM(S): Mus musculus 
2011-05-20 | E-GEOD-29362 | biostudies-arrayexpress
TranscriptomicsKDM5B focuses H3K4 methylation near promoters and enhancers during embryonic stem cell self-renewal and differentiation [RNA-Seq]
Pluripotency of embryonic stem (ES) cells is controlled in part by chromatin-modifying factors that regulate histone H3 lysine 4 (H3K4) methylation. However, it remains unclear how H3K4 demethylation contributes to ES cell function. Here, we show that KDM5B, which demethylates lysine 4 of histone H3...
ORGANISM(S): Mus musculus 
2014-01-27 | E-GEOD-53090 | biostudies-arrayexpress
GenomicsKDM5B focuses H3K4 methylation near promoters and enhancers during embryonic stem cell self-renewal and differentiation [ChIP-Seq]
Pluripotency of embryonic stem (ES) cells is controlled in part by chromatin-modifying factors that regulate histone H3 lysine 4 (H3K4) methylation. However, it remains unclear how H3K4 demethylation contributes to ES cell function. Here, we show that KDM5B, which demethylates lysine 4 of histone H3...
ORGANISM(S): Mus musculus 
2014-01-27 | E-GEOD-53087 | biostudies-arrayexpress
GenomicsRepurposing of promoters and enhancers during mammalian evolution
Repurposing of promoters and enhancers during mammalian evolution
PRJNA470431 | ENA
GenomicsChromatin-bound RB targets promoters, enhancers, and CTCF-bound loci.
Chromatin-bound RB targets promoters, enhancers, and CTCF-bound loci.
PRJNA734617 | ENA
GenomicsThe DoGA Consortium Atlas of Canine Enhancers and Promoters Across Tissues and Development
The DoGA Consortium Atlas of Canine Enhancers and Promoters Across Tissues and Development
PRJNA1378173 | ENA
GenomicsDistinct chromatin signitures of promoters, enhancers and transposons in allohexaploid wheat
Distinct chromatin signitures of promoters, enhancers and transposons in allohexaploid wheat
PRJNA499014 | ENA
GenomicsHistone Phosphoacetylation ChIP-seq of Kc167 cells from Drosophila
ChIP-seq was performed using Drosophila Kc167 cells using antibodies against H3K4me3 to identify active promoters and H3K4me1 to identify active enhancers. H3K27ac ChIPseq was performed to identify active promoters and enhancers. Once enhancers and promoters were identified, JIL-1 and histone phosph...
ORGANISM(S): Drosophila melanogaster 
2012-03-29 | E-GEOD-36374 | biostudies-arrayexpress
UnknownRegeneration and developmental enhancers are differentially compatible with minimal promoters.
Not available
S-EPMC10211259 | biostudies-literature
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