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ProteomicsBenchmarking low- and high-throughput protein cleanup and digestion methods for human fecal metaproteomics
Benchmarking low- and high-throughput protein cleanup and digestion methods for human fecal metaproteomics
ORGANISM(S): Homo sapiens (Human) human gut metagenome 
2024-05-31 | PXD049294 | Pride
Metaproteome Mass spectrometry Fasp Gut microbiota Sample preparation Multiwell plate 
UnknownDifferences in Protein Capture by SP3 and SP4 Demonstrate Mechanistic Insights of Proteomics Cleanup Techniques.
Not available
S-EPMC12333462 | biostudies-literature
TranscriptomicsEffect of column cleanup on T7 based RNA linear amplification
Zhao et al. Amplification Table 4 This experiment was designed to evaluate the effect of column cleanup on the fidelity and yield of T7 based RNA linear amplification. BC2 total RNA was amplified using the Jeffrey lab protocol with or without G50 cleanup. Set of arrays organized by shared biological...
ORGANISM(S): Homo sapiens 
2005-11-03 | E-GEOD-3562 | biostudies-arrayexpress
UnknownApplication of an improved proteomics method for abundant protein cleanup: molecular and genomic mechanisms study in plant defense.
Not available
S-EPMC3820953 | biostudies-literature
TranscriptomicsEffects of template switching (TS) primer and cDNA cleanup columns on T7 based RNA linear amplification
Zhao et al. Amplification Table 1 This experiment was designed to determine the effects of template switching (TS) primer and the type of columns used in ds cDNA cleanup on the fidelity of the T7 based RNA linear amplification. BC91 total RNA was amplified with or without TS primer and with two diff...
ORGANISM(S): Homo sapiens 
2005-11-03 | E-GEOD-3560 | biostudies-arrayexpress
TranscriptomicsMouse gestational protein restriction: Newborn offspring liver and hindleg muscle
Gestational protein restriction is a model for low birth size. We hypothesized that taurine supplementation would protect against changes in newborn liver and muscle caused by a maternal low protein diet. Pregnant mouse dams were subjected to different diet schemes from day 1 of pregnancy until birt...
ORGANISM(S): Mus musculus 
2009-11-07 | E-GEOD-12730 | biostudies-arrayexpress
TranscriptomicsVibrio cholerae: Wild type El Tor biotype versus crp mutant
Transcriptional profiling of an El Tor biotype crp mutant The virulent V. cholerae El Tor Ogawa strain C7258 (Peru isolate 1991) and an isogenic deletion mutant (WL7258) lacking DNA sequences encoding the cAMP receptor protein were grown in LB medium to optical density at 600 nm of 1.5. The cultures...
ORGANISM(S): Vibrio cholerae 
2010-05-27 | E-GEOD-7519 | biostudies-arrayexpress
GenomicsGenome binding profile of the conserved CSB-PGBD3 fusion protein in CSB-null UVSS1KO cells
The CSB-PGBD3 fusion protein arose over 43 million years ago when a 2.5 kb piggyBac 3 (PGBD3) transposon inserted into intron 5 of the Cockayne syndrome Group B (CSB) gene in the common ancestor of all higher primates. The CSB-PGBD3 fusion protein binds internally-deleted PGBD3 elements called MER85...
ORGANISM(S): Homo sapiens 
2012-07-10 | E-GEOD-37919 | biostudies-arrayexpress
TranscriptomicsPaternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals (dye swap)
Epigenetic information can be inherited through the mammalian germline, and represents a plausible transgenerational carrier of environmental information. To test whether transgenerational inheritance of environmental information occurs in mammals, we carried out an expression profiling screen for g...
ORGANISM(S): Mus musculus 
2011-01-14 | E-GEOD-25895 | biostudies-arrayexpress
GenomicsK6-Linked Ubiquitylation Signals Reactive Aldehyde-Induced RNA-Protein Crosslink Resolution
K6-Linked Ubiquitylation Signals Reactive Aldehyde-Induced RNA-Protein Crosslink Resolution
PRJNA1004331 | ENA
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