Protein interaction partner

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Unknown (2342)
Proteomics (243)
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Other (6)
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Methylation profiling (1)

Organisms

Homo sapiens (135)
Mus musculus (74)
Drosophila melanogaster (19)
Arabidopsis thaliana (6)
Streptomyces venezuelae (4)
Saccharomyces cerevisiae (4)
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Danio rerio (3)
Caenorhabditis elegans (3)
Sus scrofa (3)
Anemonia viridis (2)
Aspergillus niger (2)
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Papio anubis (2)
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Oryza sativa (1)
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Bos taurus (1)
Solanum lycopersicum (1)
Gallus gallus (1)

Organisms

Homo sapiens (56)
Mus musculus (24)
Drosophila melanogaster (6)
Escherichia coli str. K-12 substr. MG1655 (2)
Pseudomonas aeruginosa (2)
Arabidopsis thaliana (2)
Synechocystis sp. PCC 6803 (1)
Bradyrhizobium japonicum (1)
Mycobacterium tuberculosis H37Rv (1)
Papio anubis (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae BY4741 (1)
Canis lupus familiaris (1)
Sus scrofa (1)
Saccharomyces cerevisiae (1)

Repository

pride (194)
biostudies-arrayexpress (165)
ENA (118)
geo (97)
MassIVE (24)
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jPOST (10)
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EGA (4)
PAXDB (1)

Tissue

Cell culture (53)
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Plant cell (4)
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Diploid cell (2)
Blood serum (2)
Cell suspension culture (2)
Cell line cell (2)
Blood plasma (2)
Whole body (2)
Leaf (2)
Skeletal muscle cell (2)
Hepatocyte (2)
Lung (2)
Saliva (2)
PK-15 cell (1)
Lymphoblastic leukemia cell line (1)
Glomerular visceral epithelium (1)
Cervical region (1)

Disease

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Tauopathy (1)
Oral cavity cancer (1)
Myeloid leukemia (1)
Glaucoma (1)
Simpson-Golabi-Behmel syndrome type 1 (1)
Pancreatic ductal carcinoma (1)
Tularemia (1)
Frontotemporal dementia (1)
Fragile X syndrome (1)
Brain glioblastoma multiforme (1)
Obesity (1)
Liver disease (1)
Prostate carcinoma (1)
Cardiovascular system disease (1)
Parkinson's disease (1)
Leishmaniasis (1)
Brain cancer (1)

Technology Type

Mass Spectrometry (194)
Shotgun proteomics (72)
Affinity purification coupled with mass spectrometry proteomics (69)
Bottom-up proteomics (34)
Data-dependent acquisition (25)
Gel-based experiment (21)
Chemical cross-linking coupled with mass spectrometry proteomics (13)
Data-independent acquisition (6)
Mass spectrometry (5)
Top-down proteomics (5)
SWATH MS (3)
NMR spectroscopy (1)
Affinity proteomics (1)
DiaPASEF (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2500 (6)
Illumina HiSeq 2000 (5)
LTQ Orbitrap Elite (3)
LTQ (3)
Orbitrap Eclipse (3)
Q Exactive Plus (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina Genome Analyzer IIx (2)
NextSeq 500 (2)
TripleTOF 6600 (2)
Q Exactive HF (2)
Q Exactive (2)
Orbitrap Exploris 480 (2)
ScanArray 4000 [PerkinElmer] (1)
GenePix Professional 4200A [Axon Instruments] (1)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
QE-HF (1)
Orbitrap Fusion ETD (1)
LTQ Orbitrap Velos (1)
TripleTOF 5600 (1)
Orbitrap Fusion Lumos (1)
Gas Chromatography MS - positive (1)
5975C Series GC/MSD (Agilent) (1)
Bruker (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2026 (49)
2023 (48)
2025 (45)
2024 (41)
2022 (38)
2021 (30)
2013 (26)
2016 (25)
2015 (25)
2010 (22)
2020 (22)
2019 (21)
2018 (18)
2014 (17)
2008 (16)
2011 (15)
2017 (13)
2012 (11)
2007 (10)
2009 (3)
2006 (3)
2005 (1)

UNIPROT ID/AC

B5X213_SALSA (1)
A0A1S3MJ74_SALSA (1)
A0A1S3LJ89_SALSA (1)
NU5M_SALSA (1)
A0A1S3T0K5_SALSA (1)
A0A1S3KNX9_SALSA (1)
A0A1S3P7U2_SALSA (1)
A0A1S3QCR9_SALSA (1)
PYM1B_SALSA (1)
A0A1S3L8A9_SALSA (1)
8030.ENSSSAP00000118498 (1)
A0A1S3QBI1_SALSA (1)
B5X2B1_SALSA (1)
B5DH22_SALSA (1)
8030.ENSSSAP00000025413 (1)
B5XBA5_SALSA (1)
A0A1S3KQ15_SALSA (1)
A0A1S3SWS3_SALSA (1)
B5X0T0_SALSA (1)
A0A1S3MVT0_SALSA (1)
A0A1S3R5J0_SALSA (1)
B5DFU7_SALSA (1)
B9EL89_SALSA (1)
8030.ENSSSAP00000061909 (1)
A0A1S3NCH1_SALSA (1)
8030.ENSSSAP00000088105 (1)
A0A1S3Q7M0_SALSA (1)
8030.ENSSSAP00000009338 (1)
B5DGQ4_SALSA (1)
A0A1S3PPQ0_SALSA (1)

CHEBI ID

CHEBI:16414 (3)
CHEBI:17895 (3)
CHEBI:17295 (3)
CHEBI:15756 (3)
CHEBI:40585 (2)
CHEBI:16220 (2)
CHEBI:6857 (2)
CHEBI:18152 (2)
CHEBI:89741 (2)
CHEBI:30754 (2)
CHEBI:28327 (2)
CHEBI:38747 (2)
CHEBI:27514 (2)
CHEBI:42255 (2)
CHEBI:15864 (2)
CHEBI:25722 (2)
CHEBI:69187 (2)
CHEBI:16709 (2)
CHEBI:18132 (2)
CHEBI:17858 (2)
CHEBI:16856 (2)
CHEBI:28300 (2)
CHEBI:15729 (2)
CHEBI:16977 (2)
CHEBI:27452 (2)
CHEBI:16731 (2)
CHEBI:17015 (2)
CHEBI:84212 (2)
CHEBI:15344 (2)
CHEBI:116314 (2)

Metabolite Name

PG(15:0/15:0) (2)
PS(14:0/19:0) (2)
Solanidine (2)
Coniferin (2)
Methyl palmitate (2)
Taxifolin (2)
Riboflavin (2)
L-Phenylalanine (2)
2-Monolinoleoylglycerol (1)
Monohexadecanoylglycerol (1)
Monopalmitoylglycerol (1)
C12:0 (1)
1-Fluoro-25-hydroxy-16-ene-23-yne-26,27-hexadeuterovitamin-D3 (1)
24,24-difluoro-1alpha,25-dihydroxy-24a-homocholecalciferol (1)
1alpha-hydroxy-22-oxacholecalciferol (1)
AC2SGL(18:0/36:0(2Me[S],4Me[S],6Me[S],8Me[S],10Me[S],12Me[R],14Me[R],16Me[R],18Me[R],19OH)) (1)
C25:3 Highly branched isoprenoid A (1)
Hoslundin (1)
Sophoracoumestan A (1)
PIM2(19:0/16:0) (1)
PA(P-16:0/20:5(5Z,8Z,11Z,14Z,17Z)) (1)
PI(22:2(13Z,16Z)/22:1(11Z)) (1)
PI(20:3(8Z,11Z,14Z)/22:2(13Z,16Z)) (1)
PI(17:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (1)
PG(15:0/22:4(7Z,10Z,13Z,16Z)) (1)
PE-Cer(d16:2(4E,6E)/20:1(11Z)(2OH)) (1)
Isoglobotriglycosylceramide(d18:1/26:0) (1)
PS(P-16:0/19:1(9Z)) (1)
PI(20:2(11Z,14Z)/22:1(11Z)) (1)
PA(P-18:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (1)

First Public Date

2026 (17)
2025 (16)
2023 (15)
2020 (11)
2014 (10)
2024 (9)
2022 (9)
2019 (8)
2021 (6)
2018 (6)
2017 (4)
2016 (3)
2015 (3)
2013 (1)

Classification

bacteria (5)

Modification

15.994915 (1)
57.021464 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (94)
ChIP-seq (26)
RNA-seq of coding RNA (19)
ChIP-chip by tiling array (6)
Comparative genomic hybridization by array (5)
Unknown experiment type (4)
High-throughput sequencing (3)
One-color microarray (1)
Cell line - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
RIP-seq (1)
DNA-seq (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2015 (165)
2021 (152)
2016 (152)
2023 (150)
2014 (144)
2020 (144)
2018 (143)
2013 (143)
2022 (139)
2025 (136)
2012 (132)
2017 (131)
2024 (129)
2019 (122)
2011 (121)
2010 (100)
2009 (69)
2007 (54)
2008 (45)
2005 (28)
2006 (26)
2026 (19)
2002 (14)
2004 (13)
2003 (11)
2001 (11)
2000 (4)
1999 (4)
1998 (4)
1997 (2)

Lab affiliation

German Cancer Consortium (DKTK), partner site Freiburg German Cancer Research Center (DKFZ) Foundation under Public Law c/o Department of Urology Zentrale Klinische Forschung (ZKF) Medical Center-University of Freiburg Breisacher Str. 66, 79106 Freiburg, Germany (4)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (3)
Department of Biology, University of Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany (3)
center for biochemistry, University of cologne (2)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (2)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (2)
MSBioLMU Großhaderner Str. 2-4 82152 Planegg-Martinsried (2)
Head of Proteomics (2)
Department of Pharmacology and Neuroscience, The University of North Texas Health Science Center, 3500 Camp Bowie Boulevard, Fort Worth, TX 76107, USA (1)
Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK (1)
Institut Curie (1)
Sektion of Cellular and Molecular Microbiology Interfaculty Institute of Microbiology and Infection Medicine University of Tübingen Germany (1)
Associate Professor of Biochemistry & Molecular Biology, Director Proteomics Core, Indiana University School of Medicine (1)
University Hospital Bern (1)
Department of Cellular and Molecular Medicine, KU Leuven, Belgium (1)
State Key Laboratory of Virology and Hubei Province Key Laboratory of Allergy and Immunology, Institute of Medical Virology, TaiKang Center for Life and Medical Sciences, TaiKang Medical School, Wuhan University (1)
Director, MaineHealth Institute for Research, Proteomics and Lipidomics Laboratory (1)
Frontier Science Center for Immunology and Metabolism, Medical Research Institute, Wuhan University, Wuhan, Hubei 430071, China (1)
Department of Dermatology, Stanford School of Medicine, Stanford University (1)
European Molecular Biology Laboratory, Grenoble Cedex 9, France. Tel: +(33)476207238 Email: cusack@embl.fr (1)
Core Facility for Mass Spectrometry & Proteomics Center for Molecular Biology of Heidelberg University Heidelberg, Germany (1)
Proteomics Service CIC bioGUNE Bizkaia Tec. Park Build. 800 48160 Derio (Spain) (1)
Eberhard Karls University Tübingen Interfaculty Institute of Microbiology and Infection Medicine (IMIT) (1)
University of North Carolina Biochemistry and Biophysics; University of North Carolina Pathology and Laboratory Medicine; University of North Carolina Genetics and Molecular Biology Curriculum; University of North Carolina Lineberger Comprehensive Cancer Center. (1)
VIB-UGent Center for Medical Biotechnology A. Baertsoenkaai 3 B-9000 Gent Belgium (1)
MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge Biomedical Campus CB2 0QH Cambridge UK (1)
Université de Strasbourg, Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, 67084 Strasbourg France (1)
Forschungszentrum Jülich ZEA-3 Analytics (1)
Department of Bacterial Genetics, Institute of Microbiology, Faculty of Biology, University of Warsaw, Poland (1)
Georg-August-University Göttingen Department of Molecular Microbiology and Genetics Institute of Microbiology and Genetics (1)

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A multiplexed assay to identify condition-dependent changes in protein-protein interactions

Testing the effect of 80 small molecules on the interaction between 250 protein pairs

ORGANISM(S): Saccharomyces cerevisiae

2012-04-02 | E-MEXP-3467 | biostudies-arrayexpress

Match_Motif: A rapid computational tool to assist in protein-protein interaction design.

Not available

S-EPMC8740833 | biostudies-literature

Regulation of the HTRA2 protease activity by PDZ domain-binding peptide ligands and the influence on HTRA2-specific protein interaction networks in retinal tissues

For the identification of HTRA2-specific protein interaction partners in retinal tissues of the house swine (Sus scrofa), we performed co-immunoprecipitation experiments with recombinant 6His-tag HTRA2 followed by quantitative LC-MS-based proteomics (see Fig. 2A and File S1). In brief, 2 µg recombin...

ORGANISM(S): Homo sapiens (Human) Sus scrofa domesticus (domestic pig)

2021-10-11 | PXD024442 | Pride

Akt2 partners L6 myoblasts - Novel Endogenous, Insulin-Stimulated Akt2 Protein Interaction Partners in L6 Myoblasts

Insulin resistance and Type 2 diabetes are marked by an aberrant response in the insulin signaling network. The phosphoinositide-dependent serine/threonine kinase, Akt2, plays a key role in insulin signaling and glucose uptake, most notably within skeletal muscle. Protein-protein interaction regul...

ORGANISM(S): Rattus norvegicus (Rat)

2015-09-30 | PXD002557 | Pride

Akt2 Hplc-esi-ms/ms Rock2

MYC-MIZ1 protein interaction in germinal center.

PRJNA530681 | ENA

Narrow funnel-like interaction energy distribution is an indicator of specific protein interaction partner.

Not available

S-EPMC10250834 | biostudies-literature

Enhanced sampling simulations to construct free-energy landscape of protein-partner substrate interaction.

Not available

S-EPMC5425738 | biostudies-literature

Kaiso is a novel TAZ-interaction partner that promotes hepatic stellate cell activation and regulates the downstream lncRNA HIF1A-AS3