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ProteomicsPROTEOFORMER 2.0: MS validation
PROTEOFORMER is a pipeline for generating a search space of candidate translation products based on ribosome profiling data. The pipeline was published in 2014, but since then, several features have been added. For this project, the PROTEOFORMER pipeline 2.0 was tested on human HCT116 and Jurkat cel...
ORGANISM(S): Homo sapiens (Human) 
2019-05-03 | PXD011353 | Pride
Jurkat Proteoformer Hct116 Msms 
UnknownPROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.
Not available
S-EPMC4357689 | biostudies-literature
UnknownPROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms.
Not available
S-EPMC6692777 | biostudies-literature
TranscriptomicsPROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration
An increasing amount of studies integrate mRNA sequencing data into MS-based proteomics to complement the translation product search space. We present the generation of a protein synthesis-based database from deep sequencing of ribosome-protected mRNA fragments. This approach increases the overall p...
ORGANISM(S): Homo sapiens 
2014-12-01 | GSE58207 | GEO
GenomicsHomo sapiens
PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration
PRJNA251587 | ENA
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