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GenomicsVirus sp. strain:provirus | isolate:host
Virus sp. strain:provirus | isolate:host Genome sequencing
PRJNA1219074 | ENA
ProteomicsProvirus deletion from Haloferax volcanii affects motility, stress resistance and CRISPR RNA expression
Haloferax volcanii harbours four putative proviruses: Halfvol1, Halfvol2, Halfvol3 and Halfvol4. In this study we successfully deleted all four provirus genomes, demonstrating, that they are not essential. Transcriptome comparison between this strain (∆Halfvol1-4) and a wild type strain reveals an i...
ORGANISM(S): Haloferax volcanii (Halobacterium volcanii) 
2025-05-26 | PXD058393 | Pride
Provirus Haloferax volcanii Virus Motility Archaea Crispr rna 
GenomicsSystematic Identification of Factors Crucial for Provirus Silencing in Embryonic Stem Cells (ChIP-seq)
Our study reports the first genome-wide atlas of functional nodes that mediate proviral silencing in ESCs. It provides evidences for the comprehensive, interconnected and multi-layered genetic/epigenetic machineries by which ESCs maintain the repressive state of provirus and ERVs. ChIP-seq analysis...
ORGANISM(S): Mus musculus 
2015-09-14 | E-GEOD-70799 | biostudies-arrayexpress
TranscriptomicsSystematic Identification of Factors Crucial for Provirus Silencing in Embryonic Stem Cells (RNA-seq)
Our study reports the first genome-wide atlas of functional nodes that mediate proviral silencing in ESCs. It provides evidences for the comprehensive, interconnected and multi-layered genetic/epigenetic machineries by which ESCs maintain the repressive state of provirus and ERVs. RNA-seq analysis t...
ORGANISM(S): Mus musculus 
2015-09-14 | E-GEOD-70863 | biostudies-arrayexpress
GenomicsChromatin maturation of the HIV provirus in primary resting CD4+ T cells
Chromatin maturation of the HIV provirus in primary resting CD4+ T cells
PRJNA495471 | ENA
GenomicsHaloferax volcanii provirus-free strain transcriptome analysis
Transcriptome analysis of Haloferax volcanii provirus-free strain vs wild-type H100
PRJEB83039 | ENA
GenomicsChromatin maturation of the HIV provirus in primary resting CD4+ T cells
Human immunodeficiency virus (HIV) infection is a chronic condition, where viral DNA integrates into the genome. The fate of the provirus determines the infection course. Latently infected cells form a persistent, heterogeneous reservoir. The reservoir that reinstates an active infection comprises c...
ORGANISM(S): Homo sapiens 
2019-12-16 | GSE121055 | GEO
OtherPosition effects influence HIV provirus latency reversal
We propose a technology B-HIVE, which allows us to map HIV integrations in a cell population and measure their individual transcription. The principle of B-HIVE is to tag individual viral genomes with a unique barcode of 20 nucleotides that allows us to track the viral transcripts produced by each p...
ORGANISM(S): Homo sapiens 
2016-09-17 | GSE82061 | GEO
GenomicsThe chromatin landscape at the HIV-1 provirus integration site determines viral expression
The chromatin landscape at the HIV-1 provirus integration site determines viral expression
PRJNA558259 | ENA
Unknownt-RNA mediates provirus deletion in HIV-infected cells.
Not available
S-EPMC12220202 | biostudies-literature
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