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TranscriptomicsRNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants
Background: Plants attenuate their responses to a variety of bacterial and fungal pathogens, leading to higher incidences of pathogen infection at night. However, little is known about the molecular mechanism responsible for the light-induced defence response; transcriptome data would likely facilit...
ORGANISM(S): Solanum lycopersicum 
2015-09-14 | E-GEOD-64087 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of Pseudomonas syringae pv. tomato DC3000
This experiment analyses the expresssion data of the wild type P. syringae pv. tomato DC3000 compared with its fleQ mutant grown under two different conditions: liquid culture in minimal medium and swarming plates.
ORGANISM(S): Pseudomonas syringae pv. tomato str. DC3000 
2015-12-31 | E-MTAB-3779 | biostudies-arrayexpress
ProteomicsBiophysical and proteomic analyses suggest functions of Pseudomonas syringae pv tomato DC3000 extracellular vesicles in bacterial growth during plant infection
Vesiculation is a process employed by Gram-negative bacteria to release extracellular vesicles (EVs) into the environment. Bacterial EVs contain molecular cargo from the donor bacterium and play important roles in bacterial survival and growth. Here, we describe EV production in plant-pathogenic Pse...
ORGANISM(S): Pseudomonas syringae pv. tomato str. DC3000 
2023-10-24 | PXD023971 | Pride
Pattern-triggered immunity Proteomics Arabidopsis thaliana Nta Pto dc3000 Extracellular vesicles Pti Nanoparticle tracking analysis Evs 
TranscriptomicsExpression analysis of Arabidopsis plants infected with Pseudomonas syringae pv. tomato DC3000 (Pto) strains
Effector-Triggered Immunity (ETI) and Pattern-Triggered Immunity (PTI) are well-defined modes of plant immunity triggered by recognition of pathogen effector proteins and microbe-associated molecular patterns, respectively. While ETI and PTI network extensively share signaling components, the shared...
ORGANISM(S): Arabidopsis thaliana 
2014-07-29 | E-GEOD-40544 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of Pseudomonas syringae pv. tomato DC3000
This experiment analyses the expression data of the wild type P. syringae pv. tomato DC3000 grown in the absence and in the presence of phloretin and naringenin.
ORGANISM(S): Pseudomonas syringae pv. tomato 
2018-12-30 | E-MTAB-6426 | biostudies-arrayexpress
TranscriptomicsLotus japonicus-Pto DC3000 infection
Lotus japonicus is a model legume broadly used to study transcriptome regulation under different stress conditions and microorganism interaction. Understanding how this model plant protects itself against pathogens will certainly help to develop more tolerant cultivars in economically important Lotu...
ORGANISM(S): Lotus japonicus 
2013-11-01 | E-MTAB-2000 | biostudies-arrayexpress
ProteomicsAnalysis of Pto DC3000 proteins in OMVs by TMT labeling
Gram-negative bacterial extracellular vesicles (EVs) are derived by pinching off the outer membrane and are referred to as outer membrane vesicles (OMVs).This study used tandem mass tag (TMT) proteomic analysis to characterize protein cargoes in EVs of the phytopathogen Pseudomonas syringae pv. toma...
ORGANISM(S): Pseudomonas Syringae Pv. Tomato Str. Dc3000 
PXD053901 |
TranscriptomicsModeling regulatory relationships in Arabidopsis immune signaling network.
Expression profiles of 22 reference Arabidopsis immunity mutants were collected using the Arabidopsis Pathoarray 464_001 (GPL3638) in order to build a network model predicting the Arabidopsis immune signaling network. Biological signaling processes may be mediated by complex networks in which netwo...
ORGANISM(S): Arabidopsis thaliana 
2010-07-22 | E-GEOD-19663 | biostudies-arrayexpress
Genomics
Lemna japonica response to Pto DC3000
PRJNA801691 | ENA
TranscriptomicsRNA-seq analysis of Pseudomonas syringae pv. tomato DC3000
This experiment analyses the expresssion data of the wild type P. syringae pv. tomato DC3000 grown in liquid MMF (type III-inducing minimal medium), MMR minimal medium and on swarming plates
ORGANISM(S): Pseudomonas syringae pv. tomato str. DC3000 
2025-04-01 | E-MTAB-13940 | biostudies-arrayexpress
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