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TranscriptomicsTransfer of Non-coding DNA Drives Regulatory Rewiring in Bacteria
The rapid pace of evolution in bacteria is widely attributed to the promiscuous horizontal transfer and recombination of protein-coding genes. However, it is not known whether the same forces also drive the evolution of non-coding regulatory regions. Here we demonstrate that regulatory region can M-...
ORGANISM(S): Escherichia coli CFT073 
2014-11-04 | E-GEOD-59468 | biostudies-arrayexpress
ProteomicsHarnessing machine learning to unravel protein degradation in Escherichia coli
Degradation of intracellular proteins in Gram-negative bacteria regulates various cellular processes and serves as a quality control mechanism by eliminating damaged proteins. To understand what causes the proteolytic machinery of the cell to degrade some pr...
ORGANISM(S): Escherichia coli 
2021-01-13 | PXD022112 | Pride
Machine learning Silac Protein degradation Proteomics 
UnknownConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.
Not available
S-EPMC2896094 | biostudies-literature
UnknownConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.
Not available
S-EPMC1160131 | biostudies-literature
UnknownConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules.
Not available
S-EPMC4987940 | biostudies-literature
UnknownUsing evolutionary data to make sense of macromolecules with a "face-lifted" ConSurf.
Not available
S-EPMC9942591 | biostudies-literature
UnknownThe conserved carboxy terminus of the capsid domain of human immunodeficiency virus type 1 gag protein is important for virion assembly and release.
Not available
S-EPMC514996 | biostudies-literature
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