Qualitative proteomics

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Proteomics (679)
Unknown (255)
Metabolomics (13)
Transcriptomics (9)
Genomics (5)
Other (4)
Multiomics (2)

Organisms

Homo sapiens (315)
Mus musculus (77)
Rattus norvegicus (22)
Escherichia coli (18)
Arabidopsis thaliana (17)
Bos taurus (15)
Candida albicans (10)
Sus scrofa domesticus (9)
Saccharomyces cerevisiae (8)
Gallus gallus (6)
Triticum aestivum (6)
Bacteria (5)
Zea mays (5)
Caenorhabditis elegans (4)
Drosophila melanogaster (4)
Dictyostelium discoideum (1)
Oncorhynchus mykiss (1)
Sus scrofa (1)
Influenza A virus (1)
Influenza B virus (1)
Methanococcus maripaludis (1)
Methanococcus maripaludis S2 (1)
Bacillus subtilis PY79 (1)
Carassius auratus ssp. 1 MT-2012 (1)
Equus caballus (1)
Saccharum sp. (1)
Bacillus thuringiensis (1)
Bacillus thuringiensis serovar aizawai (1)
Bacillus thuringiensis serovar israelensis (1)
Bacillus thuringiensis serovar kurstaki (1)

Organisms

Mus musculus (2)
Methanococcus maripaludis (1)
Oryza sativa (1)
Homo sapiens (1)

Repository

pride (596)
MassIVE (33)
iProX (23)
PeptideAtlas (18)
MetaboLights (13)
biostudies-arrayexpress (7)
jPOST (7)
ENA (5)
geo (4)
GPMDB (2)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (95)
Blood (31)
Blood plasma (24)
Brain (22)
Epithelial cell (20)
Others (18)
Blood serum (17)
Saliva (16)
B cell (15)
Whole body (15)
Heart (14)
Plant cell (14)
Blood cell (13)
Fibroblast (13)
Skin (13)
Leaf (12)
Colon (10)
Permanent cell line cell (10)
Venom (10)
Peripheral blood mononuclear cell (9)
Liver (8)
Urine (8)
Extracellular vesicle (7)
Kidney (7)
Root (7)
Seed (7)
T cell (7)
Cell suspension culture (6)
Lung (6)
Blood platelet (5)

Disease

Disease free (13)
Colon cancer (10)
Acute leukemia (6)
Breast cancer (6)
Lymphoma (6)
COVID-19 (5)
Melanoma (5)
Plasmodium falciparum malaria (5)
Alzheimer's disease (4)
Cervix carcinoma (4)
Intracerebral hemorrhage (4)
Periodontitis (4)
Wounds and Injuries (4)
Ankylosing spondylitis (3)
Aortic valve stenosis (3)
Chronic kidney disease (3)
Parasitic helminthiasis infectious disease (3)
Parkinson's disease (3)
Prostate adenocarcinoma (3)
Schizophrenia (3)
Not Available (2)
Aniridia (2)
Brain cancer (2)
Brain ischemia (2)
Cardiovascular system disease (2)
Cerebrovascular disease (2)
Kidney disease (2)
Malaria (2)
Malignant neoplasm of ovary (2)
Multiple sclerosis (2)

Technology Type

Mass Spectrometry (596)
Shotgun proteomics (337)
Bottom-up proteomics (82)
SWATH MS (61)
Data-dependent acquisition (51)
Gel-based experiment (45)
Affinity purification coupled with mass spectrometry proteomics (36)
Top-down proteomics (30)
Data-independent acquisition (22)
HDMSE (15)
SRM/MRM (14)
RNA mass spectrometry (9)
Mass spectrometry (7)
All-ion fragmentation (6)
Mass spectrometry assay (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
DiaPASEF (4)
MSE (4)
Mass spectrometry imaging (4)
NMR spectroscopy (1)
Immunopeptidomics (1)
Two Dimensional Polyacrylamide Gel Electrophoresis (1)

Instrument Platform

LTQ Orbitrap Velos (19)
Q Exactive (12)
Orbitrap Fusion Lumos (4)
Liquid Chromatography MS - positive - reverse phase (4)
Impact II (3)
Shimadzu Nexis GC-2030-GCMS-QP2020 NX (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - negative - reverse-phase (3)
Liquid Chromatography MS - positive - reverse-phase (3)
Instrument (2)
Orbitrap Eclipse (2)
Q Exactive Plus (2)
TripleTOF 5600 (2)
AB SOLiD 4 System (1)
ACQUITY UPLC I-Class (1)
Agilent 1200 HPLC (1)
NanoACQUITY UPLC (1)
Orbitrap Exploris 480 (1)
Q Exactive HF (1)
Q-Exactive Plus quadrupole-Orbitrap mass spectrometer (1)
Thermo-Fisher LTQ XL (1)
TimsTOF (1)
TimsTOF Pro (1)
TimsTOF Pro 2 (1)
6530 Q-TOF LC/MS (Agilent) (1)
Bruker (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - - reverse phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2024 (84)
2026 (78)
2021 (75)
2025 (69)
2023 (66)
2022 (65)
2019 (49)
2018 (45)
2020 (43)
2017 (36)
2013 (24)
2014 (22)
2016 (21)
2015 (16)
2010 (3)
2012 (2)
2005 (1)
2011 (1)

UNIPROT ID/AC

128UP_DROME (1)
140U_DROME (1)
1433E_DROME (1)
1433Z_DROME (1)
18C_DROME (1)
2AAA_DROME (1)
2ABA_DROME (1)
3HIDH_DROME (1)
41_DROME (1)
5HT1R_DROME (1)
5HT2A_DROME (1)
5HT2B_DROME (1)
5NT3B_DROME (1)
6PGD_DROME (1)
6PGL_DROME (1)
7227.FBpp0070052 (1)
7227.FBpp0070054 (1)
7227.FBpp0070575 (1)
7227.FBpp0071052 (1)
7227.FBpp0073560 (1)
7227.FBpp0073589 (1)
7227.FBpp0074882 (1)
7227.FBpp0075642 (1)
7227.FBpp0076767 (1)
7227.FBpp0077066 (1)
7227.FBpp0077184 (1)
7227.FBpp0077279 (1)
7227.FBpp0078249 (1)
7227.FBpp0080495 (1)
7227.FBpp0081059 (1)

ENSEMBL ID

ENSG00000147251 (6)
ENSG00000170477 (5)

CHEBI ID

CHEBI:15354 (2)
CHEBI:15414 (2)
CHEBI:15428 (2)
CHEBI:15633 (2)
CHEBI:15729 (2)
CHEBI:15940 (2)
CHEBI:16015 (2)
CHEBI:16235 (2)
CHEBI:16255 (2)
CHEBI:16335 (2)
CHEBI:16344 (2)
CHEBI:16410 (2)
CHEBI:16414 (2)
CHEBI:16450 (2)
CHEBI:16643 (2)
CHEBI:16680 (2)
CHEBI:16695 (2)
CHEBI:16709 (2)
CHEBI:16742 (2)
CHEBI:16856 (2)
CHEBI:16857 (2)
CHEBI:16919 (2)
CHEBI:17154 (2)
CHEBI:17256 (2)
CHEBI:17295 (2)
CHEBI:17345 (2)
CHEBI:17368 (2)
CHEBI:17552 (2)
CHEBI:17659 (2)
CHEBI:17712 (2)

Metabolite Name

Glycine (2)
LPC(22:6) (2)
N-acetyl-D-glucosamine (2)
O-acetyl-L-serine (2)
UDP (2)
(+)-ar-Turmerone (1)
(+/-)-CP 47,497-C7-Hydroxy metabolite (1)
(+/-)-Equol (1)
(+/-)17(18)-EpETE methyl ester (1)
(+/-)5(6)-EET Ethanolamide (1)
(-)-Caryophyllene oxide (1)
(-)-Epigallocatechin (1)
(11E,15Z)-9,10,13-trihydroxyoctadeca-11,15-dienoic acid (1)
(12Z)-9,10,11-trihydroxyoctadec-12-enoic acid (1)
(1E)-5-hydroxy-1,7-diphenylhept-1-en-3-one (1)
(1E,4E)-1,5-bis(4-methoxyphenyl)penta-1,4-dien-3-one (1)
(1R,2R)-trans-N-Boc-1,2-cyclohexanediamine (1)
(2-butyl-1H-imidazol-4-yl)methanol (1)
(2E)-3-(3,4-dimethoxyphenyl)prop-2-enoic acid (1)
(2E)-6-hydroxy-2-methyl-6-(4-methylphenyl)hept-2-enoic acid (1)
(2E,4E)-N-(2-methylpropyl)deca-2,4-dienamide (1)
(2E,4E)-N-(2-methylpropyl)dodeca-2,4-dienamide (1)
(2E,4E)-N-[2-(4-hydroxyphenyl)ethyl]dodeca-2,4-dienamide (1)
(2R)-2-[(2R,5S)-5-[(2S)-2-hydroxybutyl]oxolan-2-yl]propanoic acid (1)
(2R)-5-hydroxy-7-methoxy-2-phenyl-3,4-dihydro-2H-1-benzopyran-4-one (1)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (1)
(2S)-2-(2-hydroxypropan-2-yl)-2H,3H,7H-furo[3,2-g]chromen-7-one (1)
(2S)-2-isopropylmalic acid (1)
(3S)-3-hydroxy-3-methylglutaryl-CoA (1)
(3S,9aS)-3-benzyl-octahydro-1H-pyrido[1,2-a]pyrazin-1-one (1)

First Public Date

2022 (1)
2021 (1)
2019 (1)
2015 (1)
2013 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (3)
15.99491 (2)
15.994915 (2)
57.02146 (2)
57.021464 (2)
-17.026549 (1)
-18.010565 (1)
127.063329 (1)
2x(15)N labeled L-lysine (1)
42.01056 (1)
42.010565 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (4)
RNA-seq of coding RNA (2)
Animal - One-color microarray (1)

Release Date

2022 (31)
2021 (28)
2020 (27)
2023 (20)
2017 (18)
2015 (16)
2025 (16)
2024 (15)
2018 (15)
2016 (14)
2019 (13)
2013 (11)
2012 (8)
2014 (7)
2010 (6)
2011 (5)
2009 (5)
2008 (3)
2026 (2)
2007 (1)
2004 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (28)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (15)
Medical Microbiology, Faculty of Medicine, University of Malaya (6)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil (5)
Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States (4)
Department of Life and Environmental Sciences, University of Cagliari (4)
Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain. (4)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (3)
Department of Biochemistry, Biomedical Sciences Building, University of Bristol, Bristol, United Kingdom (3)
Head of the Curie Institute Mass Spectrometry Platform (3)
Medical bioanalytics Institute for ophthalmic research Eberhard-Karls-University Tuebingen (3)
Michigan State University (3)
Underwood-Prescott Professor, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 56-731 Cambridge, MA 02139-4307 (3)
Beijing proteome research center (2)
Beta faculty (2)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (2)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Göttingen, Germany (2)
Core Facility Proteomics, Department of Clinical Medicine, University Medical Center Goettingen, Germany (2)
Department of Biochemistry and Molecular Biology, University of Córdoba (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Dept. of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden; Clinical proteomics mass spectrometry, Science for Life Laboratory, Sweden. (2)
Emerging Pathogens Institute, University of Florida (2)
Faculty of Biology, Technion - Israel Institute of Technology (2)
Faculty of Chemistry, Rzeszow University of Technology, Rzeszów, Poland (2)
IBERS, Aberystwyth University (2)
LBPC-PPC, Montpellier University, IRMB CHU Montpellier, INM INSERM, Montpellier, Occitanie, France (2)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil. (2)
Laboratory of Biopolymer Structure, Intercollegiate Faculty of Biotechnology UG-MUG, University of Gdansk, Gdansk, Poland (2)
Massachusetts Institute of Technology (2)
Melbourne Veterinary School, Faculty of Science, The University of Melbourne, Parkville, Victoria, Australia (2)

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Integrated Proteomics and Metabolomics Analyses Revealed Potential Phospholipid-Related Biomarkers in Rabbit Atherosclerotic Plaques

BACKGROUND AND AIMS: Atherosclerosis, characterized by dysfunction of lipid metabolism and chronic inflammation, is considered as a metabolic disorder as well as a major contributor to cardiovascular diseases. However, metabolic signatures of atherosclerosis have not been well ex...

2024-09-26 | MTBLS9737 | MetaboLights

Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics.

Not available

S-EPMC4036278 | biostudies-literature

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.

Not available

S-EPMC4189001 | biostudies-literature

Applying mass spectrometry-based qualitative proteomics to human amygdaloid complex.

Not available

S-EPMC3960493 | biostudies-literature

Large-scale qualitative and quantitative research of dityrosine crosslinking omics in Escherichia coli

Excessive reactive oxygen species cause oxidative stress in cells. Two molecules of tyrosine can generate dityrosine, which is not only a product of natural posttranslational processes, but also a putative biomarker for protein oxidation. Few studies have investigated dityrosine crosslinking under e...

ORGANISM(S): Escherichia coli

2023-05-10 | PXD039132 | Pride

Qualitative and Quantitative Shotgun Proteomics Data Analysis from Data-Dependent Acquisition Mass Spectrometry.

Not available

S-EPMC8583964 | biostudies-literature

DISCO-MS: Proteomics of spatially identified tissues in whole organs

Spatial molecular profiling of complex tissues is essential to investigate cellular function in physiological and pathological states. Liquid chromatography coupled to mass spectrometry (LC-MS) is emerging as a key technology for the unbiased characterization of proteins, the drivers of cellular fun...

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2025-11-27 | PXD025316 | Pride

Ultra-high sensitivity proteomics proteomics tissue-clearing solvent-clearing familial alzheimer’s disease mild traumatic brain injury imaging spatial proteomics

MMP qualitative and quantitative mass spectrometry

Methanococcus maripaludis is a methanogenic archaeon. Within its genome, there are two operons for membrane associated hydrogenases, eha and ehb. To investigate the regulation of ehb on the cell, an S40 mutant was constructed in such a way that a portion of the ehb operon was replaced by pac cassett...

ORGANISM(S): Methanococcus maripaludis Methanococcus maripaludis S2

2005-09-20 | GSE2744 | GEO

Qualitative and quantitative analysis of chicken semen

Chicken proteome of ejaculated spermatozoa (SPZ) and seminal plasma (SP) and evaluation of the molecular phenotype related to sperm quality were investigated using GeLC-MS/MS approach.

ORGANISM(S): Gallus gallus (Chicken)

2014-08-22 | PXD001254 | Pride

Chicken Seminal plasma Proteome Spermatozoa Label free

Comprehensive proteomics of Methylobacterium extorquens AM1 metabolism under single carbon and nonmethylotrophic conditions.

Not available

S-EPMC2707879 | biostudies-literature

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965 Results

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