Quantitative multiplexed proteomics

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Proteomics (431)
Unknown (195)
Transcriptomics (5)
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Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (329)
Alteromonadales (329)
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Ectopseudomonas oleovorans CECT 5344 (329)
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Organisms

Homo sapiens (1)

Repository

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Tissue

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Hypertrophic cardiomyopathy (1)
Leishmaniasis (1)
Marfan syndrome (1)
Plasmodium falciparum malaria (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Technology Type

Mass Spectrometry (329)
Shotgun proteomics (237)
Bottom-up proteomics (52)
Data-dependent acquisition (31)
Affinity purification coupled with mass spectrometry proteomics (19)
SWATH MS (16)
HDMSE (14)
SRM/MRM (8)
Data-independent acquisition (7)
All-ion fragmentation (5)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Top-down proteomics (5)
Mass spectrometry (3)
Gel-based experiment (3)

Instrument Platform

Orbitrap Fusion (15)
LTQ Orbitrap Velos (12)
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QExactive (10)
Q Exactive (6)
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Quattro micro API (Waters) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
Exactive (Thermo Scientific) (1)
API 4000 QTRAP (AB Sciex) (1)
Unknown (1)

Publication Date

2021 (52)
2023 (50)
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2022 (41)
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2026 (31)
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2017 (20)
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2011 (12)
2013 (5)
2010 (1)
2008 (1)
2012 (1)
2014 (1)

UNIPROT ID/AC

A5A3E0 (23)
B4DRV9 (23)
B4E3A4 (23)
I3L4N8 (23)
P04406 (23)
P07900 (23)
P08238 (23)
P0CG38 (23)
P0CG39 (23)
P13639 (23)
P18206 (23)
P18669 (23)
P21333 (23)
P21333-2 (23)
P31948 (23)
P35579 (23)
P35580 (23)
P35580-4 (23)
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P62736 (23)
P63261 (23)
P63267 (23)
P68032 (23)
P68133 (23)
Q13707 (23)

ENSEMBL ID

ENSG00000170477 (15)
ENSG00000247315 (11)
ENSG00000229353 (10)
ENSG00000204131 (2)
ENSG00000147251 (1)

CHEBI ID

CHEBI:18222 (2)
CHEBI:17992 (2)
CHEBI:30816 (2)
CHEBI:26984 (2)
CHEBI:28757 (2)
CHEBI:17234 (2)
CHEBI:29864 (2)
CHEBI:30794 (2)
CHEBI:17505 (2)
CHEBI:17148 (2)
CHEBI:37654 (2)
CHEBI:16634 (2)
CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:30746 (2)
CHEBI:17497 (2)
CHEBI:17568 (2)
CHEBI:15940 (2)
CHEBI:17306 (2)
CHEBI:18012 (2)
CHEBI:26078 (2)
CHEBI:30769 (2)
CHEBI:30037 (1)
CHEBI:136816 (1)
CHEBI:136809 (1)
CHEBI:136808 (1)
CHEBI:136804 (1)
CHEBI:136797 (1)
CHEBI:136802 (1)
CHEBI:136796 (1)

Metabolite Name

Xylose (2)
Mannitol (2)
Fructose (2)
Glucose (2)
Sucrose (2)
Alpha-Linolenate (1)
(9E)-Octadecenoic Acid (1)
Glycerol-3-Phosphate (1)
Glucose, 1,6-anhydro-, beta- (1)
Sorbitol, 1,5-anhydro- (1)
Inositol, myo- (1)
Phosphoric acid monomethyl ester (1)
Myo-Inositol-phosphate (1)
Mannose-6-phosphate (1)
Glyceric acid-3-phosphate (1)
Sinapic acid, trans- (1)
Pyridine, 3-hydroxy- (1)
Benzaldehyde, 2,5-dihydroxy- (1)
Glutaric acid, 2-oxo- (1)
Glutaric acid, 2-hydroxy- (1)
Benzoic acid, 3,4-dihydroxy- (1)
Gluconic acid-1,5-lactone (1)
Eicosanoic Acid (1)
Hexadecanoic Acid (1)
Beta-D-Galactopyranoside, 1-isopropyl-, 1-thio- (1)
5,6-dihydroxyprostaglandin F1a (1)
20beta-dihydrocortisol (1)
Erythronic Acid (1)
Glucopyranose (1)
Linoleate (1)

First Public Date

2019 (2)
2020 (1)
2018 (1)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
Not available (1)

Study type

RNA-seq of coding RNA (3)
Animal - One-color microarray (1)
Proteomic profiling by array (1)

Release Date

2020 (27)
2023 (24)
2019 (20)
2021 (19)
2025 (16)
2022 (15)
2017 (14)
2015 (12)
2018 (9)
2016 (9)
2014 (8)
2012 (8)
2024 (6)
2013 (5)
2009 (3)
2010 (2)
2011 (1)
2007 (1)
2002 (1)

Lab affiliation

Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (7)
Cellzome (7)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil (5)
Lineberger Comprehensive Cancer Center at UNC Chapel Hill (4)
Seer, Inc. (4)
Department of Biological Sciences, University of Alberta (3)
Department of Pathology, Dalhousie University (3)
Executive Science Officer, BioFrontiers InstituteDistinguished ProfessorProfessor, Howard Hughes Medical Institute MOLECULAR CELLULAR AND DEVELOPMENTAL BIOLOGY CU DENVER SCHOOL OF MEDICINE (3)
Fundación Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (3)
Harvard Medical School (3)
Agronomy College/National Key Laboratory of Wheat and Corn Crop/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University ,Zhengzhou China (2)
Cambridge Institute for Medical Research, University of Cambridge (2)
Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (2)
Cell Biology Department Harvard Medical School (2)
Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid (Spain) (2)
Chair, Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA (2)
Department of Bioanalytical Ecotoxicology, Helmholtz Centre for Environmental Research—UFZ, Leipzig, Germany (2)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (2)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (2)
Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (2)
Finley and Gygi lab Cell Biology Department Harvard Medical School US (2)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil. (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchatel, Switzerland (2)
Philip Morris R&D, Neuchatel, Switzerland (2)
USDA-ARS (2)
1. Centre for Genomic Regulation, Dr Aiguader 88, 08003 Barcelona, Spain 2. Universitat Pompeu Fabra, Dr Aiguader 88, 08003 Barcelona, Spain (1)
1. Department of Chemistry, Korea University, Seoul 02841, Republic of Korea 2. Center for Proteogenome Research, Korea University, Seoul 02841, Republic of Korea (1)
1. Division of Experimental Medicine, McGill University, Montreal, QC 2. Segal Cancer Proteomics Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC 3. Department of Pathology, Segal Cancer Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University, Montreal, QC 4. Segal Cancer Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC 5. Department of Oncology, McGill University, Montreal, QC (1)
1. Laboratório de Neurofisiologia, Departamento de Ciências Fisiológicas, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro (UERJ), Av. Prof. Manuel de Abreu 444, 5 andar – Vila Isabel, Rio de Janeiro, RJ, 20550-170, Brazil. (1)
1. Precision Medicine Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 2. Cardiovascular Disease Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 3. Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. (1)

Tags

xref:PubMed:31611688 (1)

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Multiplexed Quantitative Proteomics Provides Mechanistic Cues for Malaria Severity and Complexity

Management of severe malaria remains a critical global challenge. In this study, using a multiplexed quantitative proteomics pipeline we systematically investigated the plasma proteome alterations in non-severe and severe malaria patients. We identified a few parasite proteins in severe malaria pati...

ORGANISM(S): Homo sapiens (Human)

2020-11-06 | PXD014991 | Pride

A Review on Quantitative Multiplexed Proteomics.

Not available

S-EPMC6520187 | biostudies-literature

Real-time spectral library matching for sample multiplexed quantitative proteomics

Sample multiplexed quantitative proteomics has proved to be a highly versatile means to assay molecular phenotypes. Yet, stochastic precursor selection and precursor coisolation can dramatically reduce the efficiency of data acquisition and quantitative accuracy. To address this, intelligent data ac...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Saccharomyces Cerevisiae (ncbitaxon:4932)

2023-02-03 | MSV000091200 | MassIVE

MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics.

Not available

S-EPMC3205343 | biostudies-literature

HyperQuant-A Computational Pipeline for Higher Order Multiplexed Quantitative Proteomics.

Not available

S-EPMC7240821 | biostudies-literature

Real-Time Spectral Library Matching for Sample Multiplexed Quantitative Proteomics.

Not available

S-EPMC11554524 | biostudies-literature

Quantitative accuracy and precision in multiplexed single-cell proteomics.

Multiplexed quantitative mass spectrometry-based proteomics is shaped by numerous opposing propositions. With the emergence of multiplexed single-cell proteomics, studies increasingly present single cell measurements in conjunction with an abundant congruent carrier to improve precursor selection an...

ORGANISM(S): Homo sapiens (Human)

2022-01-28 | PXD027912 | Pride

Single-cell proteomics Benchmarking

An Automated Nanowell-Array Workflow for Quantitative Multiplexed Single-Cell Proteomics Sample Preparation at High Sensitivity.

Not available

S-EPMC10684380 | biostudies-literature

SynchroSep-MS: Parallel LC Separations for Multiplexed Proteomics.

Not available

S-EPMC12331150 | biostudies-literature

Multiplexed Targeted Quantitative Proteomics Predicts Hepatic Glucuronidation Potential.

Not available

S-EPMC4538857 | biostudies-literature

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641 Results

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Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modification

Study type

Release Date

Lab affiliation

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