Ram U U - OmicsDI

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Unknown (277)
Proteomics (26)
Transcriptomics (13)
Metabolomics (6)
Genomics (4)

Organisms

Homo sapiens (26)
Mus musculus (7)
Arabidopsis thaliana (3)
Saccharomyces cerevisiae (2)
Zea mays (1)
Canis lupus familiaris (1)
Nakaseomyces glabratus (1)
Rattus norvegicus (1)

Organisms

Homo sapiens (1)

Repository

pride (26)
biostudies-arrayexpress (15)
MetaboLights (6)
EGA (1)
ENA (1)

Tissue

Cell culture (17)
Abdominal adipose tissue (1)
Brain (1)
Epithelial cell (1)
Pancreas (1)
Prostate cancer cell (1)
Prostate gland (1)
Whole body (1)

Disease

Breast cancer (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (26)
Data-independent acquisition (22)
Bottom-up proteomics (19)
Mass spectrometry (4)
Shotgun proteomics (3)
Mass spectrometry assay (2)
Top-down proteomics (1)

Instrument Platform

Exactive (Thermo Scientific) (3)
Illumina NovaSeq 6000 (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - negative - reverse phase - LTQ Orbitrap Discovery (Thermo Scientific) (1)
Liquid Chromatography MS - positive - HILIC - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase - LTQ Orbitrap Discovery (Thermo Scientific) (1)
Mass spectrometry - negative - - LTQ Orbitrap Discovery (Thermo Scientific) (1)
Mass spectrometry - positive - - LTQ Orbitrap Discovery (Thermo Scientific) (1)

Publication Date

2025 (17)
2026 (6)
2012 (5)
2016 (4)
2017 (4)
2022 (3)
2014 (2)
2024 (2)
2015 (1)
2011 (1)
2004 (1)
2013 (1)

CHEBI ID

CHEBI:17964 (3)
CHEBI:16220 (2)
CHEBI:16235 (2)
CHEBI:16359 (2)
CHEBI:16464 (2)
CHEBI:16586 (2)
CHEBI:16737 (2)
CHEBI:16914 (2)
CHEBI:17368 (2)
CHEBI:17381 (2)
CHEBI:17405 (2)
CHEBI:18026 (2)
CHEBI:18050 (2)
CHEBI:18089 (2)
CHEBI:18347 (2)
CHEBI:23401 (2)
CHEBI:28610 (2)
CHEBI:28790 (2)
CHEBI:28832 (2)
CHEBI:30769 (2)
CHEBI:32357 (2)
CHEBI:35280 (2)
CHEBI:36274 (2)
CHEBI:40992 (2)
CHEBI:48131 (2)
CHEBI:6698 (2)
CHEBI:68641 (2)
CHEBI:7563 (2)
CHEBI:87766 (2)
CHEBI:10023 (1)

Metabolite Name

Coniferin (2)
Salicylic acid (2)
()-(E)-13-Hydroxy-10-oxo-11-octadecenoic acid (1)
()-1516-Dihydroxyoctadecanoic acid (1)
()-Quebrachidine (1)
(-)-11-Hydroxy-91516-trioxooctadecanoic acid (1)
(-)-Ethyl 3-acetoxy-2-methylbutyrate (1)
(-)-Farnesiferol C (1)
(-)-Matairesinol (1)
(-)-Methyl 5-acetoxyhexanoate (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(10betaH11xi)-11-Hydroxy-13-nor-6-eremophilen-8-one (1)
(1R)-Nepetalic acid (1)
(1R2R)-Isocitric acid (1)
(1R3R4R5S6S8x)-1-Acetoxy-8-angeloyloxy-34-epoxy-5-hydroxy-7(14)10-bisaboladien-2-one (1)
(1R3S4S6R)-69-Dihydroxyfenchone 6-O-b-D-glucoside (1)
(1R4R5S)-5-Hydroxyfenchone glucoside (1)
(1R4S6R)-6-Hydroxyfenchone glucoside (1)
(1S3R4R)-810-Dihydroxyfenchone 10-O-b-D-glucoside (1)
(1S4R)-10-Hydroxyfenchone glucoside (1)
(2-methoxyethoxy)propanoic acid (1)
(2E4Z8E)-Colneleic acid (1)
(2R)-1-O-beta-D-Galactopyranosylglycerol (1)
(3a5b)-24-oxo-24-(2-sulfoethyl)aminocholan-3-yl-b-D-Glucopyranosiduronic acid (1)
(3alpha5alpha9xi10beta)-O-(3-Hydroxy-7-drimen-11-yl)umbelliferone (1)
(3b4b5b)-45-Epoxy-p-menth-1-en-3-ol 3-glucoside (1)
(4R5S7R11S)-1112-Dihydroxy-1(10)-spirovetiven-2-one 11-glucoside (1)
(4R5S7R11x)-1112-Dihydroxy-1(10)-spirovetiven-2-one 12-glucoside (1)
(4S6R)-p-Mentha-18-diene-67-diol 7-glucoside (1)

First Public Date

2025 (1)

Study type

Transcription profiling by array (7)
ChIP-seq (2)
RNA-seq of coding RNA (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)

Release Date

2021 (31)
2022 (28)
2018 (28)
2024 (26)
2025 (24)
2019 (23)
2023 (22)
2017 (22)
2016 (20)
2020 (20)
2015 (10)
2014 (7)
2012 (6)
2011 (5)
2026 (4)
2010 (4)
2009 (3)
2004 (2)
2013 (2)
2008 (2)
2007 (1)
2006 (1)
2003 (1)

Lab affiliation

UCSD (15)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (3)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Department of Cell Biology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Poland (1)
Department of Chemistry, University of Kansas, Lawrence, KS, United States (1)
Department of Chemistry, University of Wisconsin-Madison (1)
MPI for Brain Research, Proteomics, Frankfurt, Germany (1)
The Alexander Silberman Institute of Life Science and The Wolfson Centre for Applied Structural Biology, Faculty of Science and Mathematics, The Edmond J. Safra Campus at Givat Ram,TheHebrew University of Jerusalem, Jerusalem, 91904, Israel. (1)
Utrecht University (1)

Tags

xref:PubMed:39700280 (1)

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mRNA cap methylation in pluripotency and differentiation

The mRNA cap recruits factors essential for transcript processing and translation initiation. We report that regulated mRNA cap methylation is a feature of embryonic stem cell (ESC) differentiation. Expression of the mRNA cap methyltransferase activating subunit, RAM, is elevated in ESCs resulting i...

ORGANISM(S): Mus musculus

2016-06-14 | E-GEOD-81849 | biostudies-arrayexpress

Insights from meta-analysis and experimental validation identify exosomal miR-146a-5p as a potential biomarker for sporadic amyotrophic lateral sclerosis.

Not available

S-EPMC12484843 | biostudies-literature

Multicenter, Phase 4 Clinical Study from India to Evaluate the Safety and Efficacy of Insulin Glargine 300 U/ml in Insulin-Naive People with Type 2 Diabetes Uncontrolled on Oral Anti-hyperglycemic Drugs: SAFEGUARD Study.

Not available

S-EPMC12182549 | biostudies-literature

Maize gene expression during infection with Ustilago maydis strains SG200Dpit1 and SG200Dpit2

Ustilago maydis is a basidiomycete fungus that causes smut disease in maize. Most prominent symptoms of the disease are plant tumors, which can be induced by U. maydis on all aerial parts of the plant. We identified two linked genes, pit1 and pit2, which are specifically expressed during plant colon...

ORGANISM(S): Zea mays

2011-07-01 | E-GEOD-28479 | biostudies-arrayexpress

Characterization of two distinct glycosyl hydrolase family 78 alpha-L-rhamnosidases from Pediococcus acidilactici.

Not available

S-EPMC3187141 | biostudies-literature

Multi-organ quantitative proteome map following ASNase treatment

We applied the ultra-fast proteome profiling workflow to tissues collected from NSG mice treated with PBS (vehicle control), 20,000 U/kg ASNaseWT (Spectrila®), or 20,000 U/kg ASNaseQ59L for 0, 1, 3, 5, and 8 d. At each time point, mice were euthanized, and 13 tissues were collected, including subcut...

ORGANISM(S): Mus musculus (Mouse)

2026-01-14 | PXD055590 | Pride