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TranscriptomicsCyanide response in Escherichia coli
The goal was to ascertain the impact of cyanide treatment on E. coli's transcriptome. There were 4 biological samples. For each sample there were two replicate DNA microarray performed. Data was analyzed with Imagene and lcDNA Hyduke DR, Rohlin L, Kao KC, Liao JC. 2003 A software package for cDNA ...
ORGANISM(S): Escherichia coli 
2014-07-31 | E-GEOD-23578 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human frozen tumor biopsies from diffuse large cell lynohoma patients reveals mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
Diffuse large B-cell lymphoma (DLBCL), the most common form of lymphoma in adulthood, comprises multiple biologically and clinically distinct subtypes including germinal center B cell-like (GCB) and activated B cell like (ABC) DLBCL. Gene expression profile studies have shown that its most aggressiv...
ORGANISM(S): Homo sapiens 
2009-04-19 | E-GEOD-12195 | biostudies-arrayexpress
MetabolomicsBenthic exometabolites and their ecological significance on threatened Caribbean coral reefs (Metabolite collection incubation assays)

Benthic organisms sustain coral reefs through their growth and metabolism, but less is known about how their released metabolites influence reef seawater microorganisms. To investigate metabolite composition of benthic exudates and their ecological significance for reef microbial communities, we ...

2022-08-22 | MTBLS2855 | MetaboLights
UnknownUsing a Consensus-Driven Approach to Incorporate Holistic Review Into an Internal Medicine Residency Program
Not available
S-EPMC10449341 | biostudies-literature
ProteomicsImmunoprecipitation-Mass Spectrometry (IP-MS) identifies components of a Mce4A-containing complex
How lipids travel between membranes of diderm bacteria is a challenging mechanistic question because lipids, which are hydrophobic molecules, must traverse a hydrophilic periplasm. This question is even more complex for mycobacteria, which have a unique cell envelope that is highly impermeable to mo...
ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
2022-02-16 | PXD023082 | Pride
Ip-ms Mycobacteria Ap-ms Mce transporters 
UnknownShort-term changes in mental health help-seeking behaviors following exposure to multiple social stressors and a natural disaster.
Not available
S-EPMC11134597 | biostudies-literature
TranscriptomicsEndothelial C/EBPβ/AEP Pathway Drives Vascular Deterioration and Systemic Aging
Age-related microvascular dysfunction disrupts nutrient homeostasis and waste clearance, leading to organ failure. However, a critical gap remains in our understanding of the specific molecular drivers of vascular deterioration and how they orchestrate organism-wide aging. Here, we identify progress...
ORGANISM(S): Mus musculus 
2026-05-30 | E-MTAB-17006 | biostudies-arrayexpress
TranscriptomicsGene expression in spinal cord neurons grown on polyornithine or on carbon nanotube (CNT)-based substrates
Carbon nanotubes are cylindrically-shaped carbon nanostructures, made up of layers of graphene rolled onto themselves, with diameters similar to those of neuronal processes. In the last decade, CNT have been used as biocompatible growing substrates for neuronal attachment, differentiation and growth...
ORGANISM(S): Rattus norvegicus 
2013-08-05 | E-GEOD-27212 | biostudies-arrayexpress
TranscriptomicsNon-circadian expression masking clock-driven weak transcription rhythms in U2OS cells
U2OS cells harbor a circadian clock but express only a few rhythmic genes in constant conditions. We identified 3040 binding sites of the circadian regulators BMAL1, CLOCK and CRY1 in the U2OS genome. Most binding sites even in promoters do not correlate with detectable rhythmic transcript levels. L...
ORGANISM(S): Homo sapiens 
2014-05-23 | E-GEOD-57891 | biostudies-arrayexpress
GenomicsGlobal genomic profiling of p53-regulated genes
p53 is a critical tumor suppressor and works as a stress-induced transcription factor to induce target genes mediating apoptosis, cell cycle arrest and senescence or other responses. To gain new insights into p53 biology, we used high-throughput sequencing to analyze global p53 transcriptional netwo...
ORGANISM(S): Mus musculus 
2013-04-21 | E-GEOD-46240 | biostudies-arrayexpress
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