Reader complex - OmicsDI

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Transcriptomics (625)
Unknown (533)
Genomics (289)
Proteomics (87)
Other (21)
Metabolomics (12)
Methylation profiling (2)
Multiomics (1)

Organisms

Homo sapiens (449)
Mus musculus (191)
Rattus norvegicus (20)
Saccharomyces cerevisiae (20)
Arabidopsis thaliana (18)
Drosophila melanogaster (11)
Mytilus galloprovincialis (5)
Toxoplasma gondii (5)
Schizosaccharomyces pombe (4)
Danio rerio (4)
Rattus rattus (3)
Caenorhabditis elegans (3)
Hordeum vulgare (2)
Triticum aestivum (2)
Sus scrofa (2)
Oryza sativa (2)
Solanum lycopersicum (2)
Synechococcus sp. WH 7803 (1)
Moraxella catarrhalis (1)
Lactococcus lactis (1)
Neisseria gonorrhoeae (1)
Cannabis sativa (1)
Saccharomyces pastorianus (1)
Daphnia magna (1)
Mus musculus domesticus (1)
Rubus idaeus (1)
Zea mays (1)
Bos taurus (1)
Canis lupus familiaris (1)
Pseudomonas aeruginosa (1)

Organisms

Homo sapiens (72)
Mus musculus (59)
Arabidopsis thaliana (13)
Saccharomyces cerevisiae (13)
Drosophila melanogaster (9)
Caenorhabditis elegans (4)
Toxoplasma gondii (4)
Schizosaccharomyces pombe (2)
Solanum lycopersicum (2)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Danio rerio (1)
Plasmodium falciparum (1)

Repository

biostudies-arrayexpress (574)
ENA (200)
geo (171)
pride (64)
MetaboLights (12)
iProX (11)
MassIVE (10)
EGA (1)

Tissue

Cell culture (19)
Embryonic stem cell (3)
Plant cell (3)
Fibroblast (3)
Permanent cell line cell (3)
HEK-293T cell (2)
Brain (2)
Cell suspension culture (2)
Root (2)
Testis (2)
Whole body (2)
Leaf (2)
Liver (2)
Blood cell (2)
Blood (2)
Fibroblast cell line (1)
Macrophage cell line (1)
Fungal spore (1)
Long bone (1)
Ovarian surface epithelial cell (1)
Cervix epithelium (1)
Endosperm (1)
Cerebellar neuron (1)
Sperm (1)
Ciliated cell (1)
Thyroid gland (1)
Epithelial cell of cervix (1)
Blood platelet (1)
Adipose tissue (1)
Muscle (1)

Disease

Breast adenocarcinoma (2)
Glioblastoma (2)
Breast cancer (2)
Human cytomegalovirus infection (2)
Cervix carcinoma (2)
"lung disease: control, Diagnosis: non-small cell squamous cell carcinoma" (1)
Rheumatoid arthritis (1)
Infant SGA (1)
Renal cell carcinoma (1)
Colorectal adenocarcinoma (1)
Wilms tumour (1)
HIV state: positive, infected with non-typhoidal salmonellosis (1)
Normal (1)
Leukemia (1)
Ovarian carcinoma (1)
Plasmodium falciparum malaria (1)
Lymphoma (1)
Chronic myeloid leukemia (1)
Acute myeloid leukemia (1)
Influenza (1)
Schizophrenia (1)
Disease free (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (64)
Shotgun proteomics (25)
Affinity purification coupled with mass spectrometry proteomics (18)
Bottom-up proteomics (12)
Data-dependent acquisition (9)
Mass spectrometry (8)
Gel-based experiment (7)
Data-independent acquisition (4)
Mass spectrometry assay (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SWATH MS (2)
SRM/MRM (2)
Top-down proteomics (2)
NMR spectroscopy (1)
HDMSE (1)

Instrument Platform

ArrayWoRx Biochip Reader [Applied Precision] (11)
Illumina HiSeq 2000 (4)
Illumina Genome Analyzer IIx (3)
Illumina NovaSeq X (3)
Illumina NovaSeq 6000 (3)
LTQ Orbitrap Velos (3)
Orbitrap Fusion Lumos (3)
Liquid Chromatography MS - positive - reverse-phase (3)
Liquid Chromatography MS - negative - reverse-phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
GenePix 4000B [Axon Instruments] (2)
NextSeq 500 (2)
Tandem Gas Chromatography MS - (2)
Liquid Chromatography MS - negative - hilic (2)
Beadarray reader (1)
Illumina BeadArray reader (1)
NextSeq 2000 (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
Orbitrap Ascend (1)
ZenoTOF 7600 (1)
TripleTOF 5600+ (1)
TripleTOF 5600 (1)
Orbitrap Exploris 240 (1)
QExactive (Thermo Scientific) (1)
Tandem Gas Chromatography MS - positive (1)
Direct infusion MS - (1)
Direct infusion MS - positive (1)
Bruker (1)

Publication Date

2014 (91)
2013 (84)
2015 (70)
2011 (67)
2012 (66)
2010 (66)
2016 (54)
2026 (42)
2025 (41)
2021 (41)
2024 (32)
2018 (31)
2022 (28)
2023 (27)
2008 (22)
2017 (18)
2019 (15)
2020 (14)
2009 (8)
2006 (7)
2005 (7)
2007 (6)
2004 (1)

CHEBI ID

CHEBI:17568 (4)
CHEBI:18050 (4)
CHEBI:16857 (4)
CHEBI:15603 (4)
CHEBI:16643 (4)
CHEBI:17295 (4)
CHEBI:17768 (3)
CHEBI:17553 (3)
CHEBI:17256 (3)
CHEBI:25094 (3)
CHEBI:15978 (3)
CHEBI:16695 (3)
CHEBI:17533 (3)
CHEBI:16708 (3)
CHEBI:16750 (3)
CHEBI:16977 (3)
CHEBI:16988 (3)
CHEBI:28842 (3)
CHEBI:15428 (3)
CHEBI:16958 (3)
CHEBI:15741 (3)
CHEBI:17268 (3)
CHEBI:17821 (3)
CHEBI:17154 (3)
CHEBI:16865 (3)
CHEBI:17196 (3)
CHEBI:17115 (3)
CHEBI:16235 (3)
CHEBI:15940 (3)
CHEBI:17509 (3)

Metabolite Name

Guanine (6)
L-Proline (5)
L-Serine (5)
L-Tyrosine (5)
1-Methyladenosine (5)
Niacinamide (4)
L-Lysine (4)
Glutathione (4)
Ornithine (4)
2-Methylbutyroylcarnitine (4)
L-Threonine (4)
L-Histidine (4)
Choline (4)
Sphinganine (4)
Spermidine (4)
L-Glutamine (4)
Creatine (4)
L-Methionine (4)
L-Phenylalanine (4)
Alanylphenylalanine (3)
Ethanolamine (3)
L-Norleucine (3)
Acetophenone (3)
Uracil (3)
Thymine (3)
Sphingosine (3)
Lumichrome (3)
L-Methionine S-oxide (3)
L-Aspartic acid (3)
5-Phenyl-1,3-oxazinane-2,4-dione (3)

First Public Date

2025 (32)
2024 (29)
2021 (23)
2026 (21)
2022 (19)
2023 (18)
2018 (16)
2017 (12)
2016 (9)
2020 (7)
2019 (7)
2014 (5)
2015 (2)

Classification

protozoa (5)
bacteria (1)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (364)
Methylation profiling by array (86)
ChIP-seq (30)
RNA-seq of coding RNA (25)
Comparative genomic hybridization by array (10)
Genotyping by array (9)
Other (8)
ChIP-chip by array (5)
Unknown experiment type (4)
Methylation profiling by high throughput sequencing (4)
ChIP-chip by tiling array (3)
RIP-seq (3)
Human - One-color microarray (2)
Transcription profiling by tiling array (2)
Proteomic profiling by array (2)
MeDIP-seq (1)
Animal - One-color microarray (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
MBD-seq (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2014 (99)
2013 (90)
2025 (78)
2015 (76)
2011 (74)
2023 (73)
2012 (70)
2010 (70)
2022 (69)
2016 (66)
2021 (56)
2024 (55)
2018 (48)
2019 (40)
2020 (37)
2017 (30)
2008 (24)
2026 (18)
2009 (10)
2006 (8)
2005 (7)
2007 (6)
2004 (1)
1999 (1)

Lab affiliation

West China Second University Hospital, Sichuan University (2)
Dept. of Molecular Biosciences, University of Texas at Austin, Texas 78712 USA (2)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (2)
Center for Cell Signaling Department of Biochemistry & Molecular Genetics University of Virginia, Charlottesville, VA, USA (2)
University of Leicester (1)
Department of Burns and Reconstructive Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China. (1)
Reader,Wellcome-Wolfson Institute for Experimental Medicine, School of Medicine, Dentistry & Biomedical Science, Queens University Belfast (1)
Dr. Richard Bartfai ; Department of Molecular Biology ; Faculty of Science ; Radboud University ; Geert Grooteplein 28 ; 6525GA Nijmegen, The Netherlands; Tel.: +31 (0)24-3610561 ; r.bartfai@science.ru.nl (1)
Technischen Universität Berlin wellcome trust centre for cell biology, University of Edinburgh (1)
Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI, USA Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA (1)
1. Department of Chemistry, School of Science, Westlake University, Hangzhou 310030, Zhejiang Province, China 2. Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou 310024, Zhejiang Province, China 3. Institute of Natural Sciences, Westlake Institute for Advanced Study, Hangzhou 310024, Zhejiang Province, China (1)
Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), 1030 Vienna, Austria (1)
Max Planck Institute of Biochemistry Department Proteomics and Signal Transduction Am Klopferspitz 18 82152 Martinsried, Germany (1)
Zoonosis Science Center, Department of Medical Sciences, Uppsala University, Uppsala SE-75185, Sweden (1)
Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. (1)
College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, 10461, USA (1)
Head of MRC LMS proteomics core (1)
Department of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA. (1)
Department of Molecular, Cellular, & Biomedical Sciences, Chu Lab, University of New Hampshire, United States (1)
Professor at Section for Computational and RNA Biology, Copenhagen University (1)
Proteomics Core Facility at Sahlgrenska Academy, University of Gothenburg (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Charité Universitätsmedizin Berlin, Germany (1)
Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland (1)
Institute of Biochemistry II, Goethe University School of Medicine, Frankfurt am Main, Germany (1)
Centre for medicines discovery, University of Oxford (1)
CRG, UPF (1)
Department of Clinical Microbiology, Sahlgrenska University Hospital, Gothenburg, Sweden (1)
University of Vienna, Department of Analytical Chemistry, Joint Metabolome Facility (1)

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A DNA methylation reader complex that enhances gene transcription

PRJNA427202 | ENA

Identification of PRC2 complex interactor

Affinity capture of PRC2 complex and its reader protein BP1

ORGANISM(S): Fusarium Graminearum Ph-1

PXD028134 |

Structural basis of YTH domain as m6A reader

The N6-methyladenosine (m6A) is the most abundant internal modification in almost all eukaryotic messenger RNAs, and is dynamically regulated. Therefore, identification of m6A readers is especially important in determining the cellular function of m6A. YTHDF2 has recently been characterized as the f...

ORGANISM(S): Homo sapiens

2014-09-18 | E-GEOD-58352 | biostudies-arrayexpress

A H3K27me3 reader complex couples H3K27me3 accumulation to nascent transcription of transposable elements in Paramecium

PRJEB106600 | ENA

A H3K27me3 reader complex couples H3K27me3 accumulation to nascent transcription of transposable elements in Paramecium

BackgroundThe ability to deposit histone H3K27-trimethyl (me3) marks is essential for transcriptional repression by Polycomb Repressive Complex 2 (PRC2). This is largely attributed to Polycomb repressive complex 1 (PRC1), whose recruitment is H3K27me3-dependent. Yet it is unclear how H3K27me3 contri...

ORGANISM(S): Paramecium tetraurelia

2026-03-03 | PXD065449 | Pride

Histone H4 acetylation and epigenetic reader Brd4 are critial regulators of pluripotency in embryonic stem cells

Histone H4ac and Brd4 are critical for ESCs 12 samples: 2 replicates for each ChIP, 2 replicates for each input sample.

ORGANISM(S): Mus musculus

2016-02-11 | E-GEOD-76760 | biostudies-arrayexpress

An androgen signaling axis uses a writer and a reader of ADP-ribosylation to control protein complex assembly

Androgen signaling through the androgen receptor (AR) regulates multiple pathways in both normal and prostate cancer cells. Androgen regulates diverse aspects of the AR life cycle, including its post-translational modification, but understanding how specific modifications influence AR activity has b...

ORGANISM(S): Homo sapiens (Human)

2021-05-28 | PXD018811 | Pride

An androgen signaling axis uses a writer and a reader of ADP-ribosylation to control protein complex assembly

ORGANISM(S): Homo sapiens (Human)

2021-04-23 | PXD025195 | Pride

Human Lc-ms Androgen receptor Mono-adp ribosyltransferase

A DNA methylation reader complex that enhances gene transcription.

Not available

S-EPMC6353633 | biostudies-literature

The GTE4–EML chromatin reader complex concurrently recognizes histone acetylation and H3K4 trimethylation in Arabidopsis

PRJNA1027557 | ENA

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1576 Results

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