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TranscriptomicsHigh-resolution genome-wide transcriptomics analysis of O. dioica during recovery from growth arrest
Polycistronic mRNAs transcribed from operons are resolved via the trans-splicing of a spliced leader (SL) RNA. The SL is also frequently trans-spliced to monocistronic transcripts. Using a modified cap analysis of gene expression (CAGE) protocol we mapped sites of SL trans-splicing genome-wide in th...
ORGANISM(S): Oikopleura dioica 
2015-01-26 | E-GEOD-50848 | biostudies-arrayexpress
TranscriptomicsGenome-wide map of spliced-leader-led trans-splice sites in Oikopleura dioica
Polycistronic mRNAs transcribed from operons are resolved via the trans-splicing of a spliced leader (SL) RNA. The SL is also frequently trans-spliced to monocistronic transcripts. Using a modified cap analysis of gene expression (CAGE) protocol we mapped sites of SL trans-splicing genome-wide in th...
ORGANISM(S): Oikopleura dioica 
2015-01-26 | E-GEOD-50849 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human skin fibroblasts to low and high doses of UVC radiation to assess cellular transcriptional responses to UVC-induced DNA damage
DNA damage caused by UV radiation initiates cellular recovery mechanisms, which involve activation of DNA damage response pathways, cell cycle arrest and apoptosis. To assess cellular transcriptional responses to UVC-induced DNA damage we compared time course responses of human skin fibroblasts to l...
ORGANISM(S): Homo sapiens 
2007-09-21 | E-GEOD-713 | biostudies-arrayexpress
TranscriptomicsHigh-resolution genome-wide transcriptomics analysis of O. dioica during recovery from growth arrest
Polycistronic mRNAs transcribed from operons are resolved via the trans-splicing of a spliced leader (SL) RNA. The SL is also frequently trans-spliced to monocistronic transcripts. Using a modified cap analysis of gene expression (CAGE) protocol we mapped sites of SL trans-splicing genome-wide in th...
ORGANISM(S): Oikopleura dioica 
2015-01-26 | GSE50848 | GEO
ProteomicsPEPseq Quantifies Transcriptome-Wide Changes in Protein Occupancy and Reveals Selective Translational Repression After Translational Stress
Post-transcriptional gene regulation is accomplished by the interplay of the transcriptome with RNA-binding proteins, which occurs in a dynamic manner in response to altered cellular conditions. Recording the combined occupancy of all proteins binding to the transcriptome offers the opportunity to i...
ORGANISM(S): Homo sapiens (Human) 
2023-10-24 | PXD042395 | Pride
Nascent proteome enrichment Protein-rna crosslinking Aha Protein occupancy on rna Arsenite washout Recovery from translational arrest Silac 
ProteomicsS.cerevisiae - Whole organism, SC (Serikawa,mcp,2003)
abundance based on Spectral counting, Interaction consistency score: 1.6, Coverage: 20
ORGANISM(S): 4932 
2003-00-00 | 2226156413 | PAXDB
GenomicsOikopleura dioica
High-resolution genome-wide transcriptomics analysis of O. dioica during recovery from growth arrest
PRJNA219163 | ENA
UnknownHyperacute autonomic and cortical function recovery following cardiac arrest resuscitation in a rodent model.
Not available
S-EPMC10723251 | biostudies-literature
TranscriptomicsGenome-wide analysis of muscle gene expression in response to an intense cycling exercise. Effect of two protein-leucine enriched diets
Protein-leucine supplement ingestion following strenuous endurance exercise accentuates skeletal-muscle protein synthesis and adaptive molecular responses, but the underlying transcriptome is uncharacterized. In a randomized single-blind triple-crossover design, 12 trained men completed 100 min of h...
ORGANISM(S): Homo sapiens 
2015-11-23 | E-GEOD-44818 | biostudies-arrayexpress
GenomicsTranscriptome analysis of B. subtilis cells during recovery from injury after high hydrostatic pressure treatment
Transcriptome analysis of B. subtilis cells during recovery from injury after high hydrostatic pressure treatment
PRJNA521292 | ENA
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