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TranscriptomicsCCAAT/enhancer-binding protein alpha target genes in myeloid progenitor cells uncovered by chromatin IP
CCAAT/enhancer-binding protein alpha (C/EBPM-NM-1) is a lineage-specific transcription factor that directs development of granulocytes. To obtain insights into the genome-wide transcriptome of wild type C/EBPM-NM-1, we have performed chromatin immunoprecipitation on DNA promoter microarrays (ChIP-ch...
ORGANISM(S): Mus musculus 
2013-12-01 | E-GEOD-19321 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae response to carbon limitation in aerobic chemostat cultures
Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-8088 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae response to nitrogen limitation in chemostat culture
Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-8089 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae to zinc limitation in chemostat cultures
Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-8035 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Saccharomyces cerevisiae response to weak organic acids in chemostat cultures
Raw expression values (CHP data) for transcriptional profiling of the response of Saccharomyces cerevisiae to challenges with various weak organic acids Experiment Overall Design: The laboratory reference strain CEN.PK 113-7D (MATa) was grown at 30 °C in 2-L chemostat fermentors (Applikon, Schiedam...
ORGANISM(S): Saccharomyces cerevisiae 
2009-04-23 | E-GEOD-5926 | biostudies-arrayexpress
TranscriptomicsReorganization of nuclear lamina – genome interactions upon differentiation of embryonic stem cells.
The three-dimensional organization of chromosomes within the nucleus and its dynamics during differentiation are largely unknown. We present a genome-wide analysis of the interactions between chromatin and the nuclear lamina during differentiation of mouse embryonic stem cells (ESCs) into lineage-co...
ORGANISM(S): Mus musculus 
2010-05-27 | E-GEOD-17051 | biostudies-arrayexpress
TranscriptomicsYap1/Birc, c-Met and N-ras DNA amplifications are mutually exclusive in mouse mammary tumors.
Tumors acquire somatic DNA copy number aberrations, leading to activation of oncogenes and inactivation of tumor suppressors. Many studies have focused on the analysis of single copy number aberrations and associated driver genes, but few studies have performed combinatorial analyses. We propose a g...
ORGANISM(S): Mus musculus 
2011-12-01 | E-GEOD-28432 | biostudies-arrayexpress
TranscriptomicsMutant-CCAAT/enhancer-binding protein alpha target genes in myeloid progenitor cells by chromatin IP
CCAAT/enhancer-binding protein alpha (C/EBPM-NM-1) is a lineage-specific transcription factor that directs development of granulocytes. To obtain insights into the genome-wide transcriptome of mutant C/EBPM-NM-1, we have performed chromatin immunoprecipitation on DNA promoter microarrays (ChIP-chip)...
ORGANISM(S): Mus musculus 
2013-12-01 | E-GEOD-36268 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae in carbon-limited anaerobic/aerobic growth
Addition of 3 new arrays made from carbon limited chemostat of CENPK113-7D and 3 new arrays made from aerobic carbon limited chemostat of CENPK113-7D Complmentary data to the data of the serie GSE1723. Experiment Overall Design: GSM108368, GSM 108369 and GSM108370 are biological replicates Experimen...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-13 | E-GEOD-4807 | biostudies-arrayexpress
TranscriptomicsA mesenchymal stromal cell gene signature for donor age
Human aging is associated with loss of function and regenerative capacity. Human bone marrow derived mesenchymal stromal cells (hMSCs) are involved in tissue regeneration, evidenced by their capacity to differentiate into several lineages and therefore are considered the gold standard for cell-based...
ORGANISM(S): Homo sapiens 
2012-07-20 | E-GEOD-39540 | biostudies-arrayexpress
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