Repository for targeted proteomics

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Proteomics (112)
Unknown (25)
Metabolomics (13)
Genomics (2)
Transcriptomics (1)

Organisms

Schizosaccharomyces pombe (81)
Oryza sativa Indica Group (81)
Sinorhizobium meliloti BL225C (81)
Sus scrofa domesticus (81)
Saccharomyces cerevisiae (81)
Staphylococcus aureus (81)
Rattus norvegicus (81)
Escherichia coli (81)
Entamoeba histolytica (81)
Physcomitrium patens (81)
Methylohalobius crimeensis 10Ki (81)
Homo sapiens (81)
Shigella flexneri (81)
Ctenopharyngodon idella (81)
Danio rerio (81)
Allexis (81)
Shigella (81)
Pseudomonas putida KT2440 (81)
Zea mays (81)
Meleagris gallopavo (81)
Medicago truncatula (81)
Pseudomonas fluorescens WH6 (81)
Listeria monocytogenes (81)
Drosophila (81)
Callinectes sapidus (81)
Bos taurus (81)
Ensifer adhaerens (81)
Trypanosoma brucei (81)
Homo sapiens (27)
Malassezia furfur (1)

Organisms

Homo sapiens (2)

Repository

pride (81)
PeptideAtlas (23)
MetaboLights (13)
MassIVE (4)
PanoramaPublic (2)
ENA (2)
biostudies-arrayexpress (1)
geo (1)
iProX (1)

Tissue

Others (18)
Cell culture (8)
Blood serum (5)
Blood plasma (4)
Kidney (4)
Cerebrospinal fluid (3)
Heart (3)
Brain (3)
HeLa cell (3)
Lung (3)
Liver (3)
Blood cell (3)
Kidney (2)
Bone marrow (2)
Hepatocyte (2)
Epithelial cell (2)
Blood (2)
Lung (1)
Plasma Non-glyco (1)
Digestive System (1)
Professional antigen presenting cell (1)
Insulin catabolic process (1)
Glandular cell of the large intestine (1)
Nephrocyte (1)
Regular cardiac myocyte (1)
Wound fluid (1)
Pancreatic islet cell (1)
Ovary cancer cell (1)
Type B pancreatic cell (1)
Yeast (1)

Disease

Disease free (3)
Wounds and Injuries (2)
Tinea unguium (1)
Keratitis (1)
Diarrhea (1)
Pneumonia (1)
Lung combined type small cell carcinoma (1)
Non-small cell lung carcinoma (1)
Plasmodium falciparum malaria (1)
Severe acute respiratory syndrome (1)
Epilepsy (1)
Adult spinal muscular atrophy (1)
Renal clear cell carcinoma (1)
Papillary renal cell carcinoma (1)
Cardiovascular system disease (1)
Malignant neoplasm of ovary (1)
Breast cancer (1)
Colon cancer (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (81)
Shotgun proteomics (36)
Mass spectrometry (12)
SWATH MS (12)
Bottom-up proteomics (12)
Gel-based experiment (9)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
SRM/MRM (6)
Data-dependent acquisition (6)
Affinity purification coupled with mass spectrometry proteomics (6)
All-ion fragmentation (2)
Data-independent acquisition (2)
Top-down proteomics (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
MSE (1)

Instrument Platform

TripleTOF 5600 (24)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
LTQ Orbitrap XL (1)
Liquid Chromatography MS - - - LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography Tandem MS (LC-MS/MS (Negative)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS (Positive)) (1)
SYNAPT G2 HDMS (Waters) (1)
Gas Chromatography MS - positive (1)
Exactive (Thermo Scientific) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2014 (25)
2024 (14)
2023 (12)
2025 (12)
2022 (10)
2026 (8)
2021 (8)
2019 (8)
2020 (8)
2017 (6)
2016 (5)
2018 (5)
2015 (3)
2013 (1)

UNIPROT ID/AC

Q9Y490 (23)
Q9BYX7 (23)
Q71V99 (23)
Q562R0 (23)
Q2QD09 (23)
Q04917 (23)
P63104 (23)
P62258 (23)
P61981 (23)
P60174 (23)
P27797 (23)
P18206 (23)
P14314 (23)
P12814-3 (23)
P12814 (23)
Q13707 (23)
P68133 (23)
P68032 (23)
P63267 (23)
P62937 (23)
P62736 (23)
P07237 (23)
P54652 (23)
P50395 (23)
P37802 (23)
P34931 (23)
P31946 (23)
P30101 (23)
P30041 (23)
P27348 (23)

ENSEMBL ID

ENSG00000170477 (17)
ENSG00000247315 (6)
ENSG00000147251 (6)
ENSG00000229353 (4)
ENSG00000204131 (1)

CHEBI ID

CHEBI:27570 (6)
CHEBI:27897 (6)
CHEBI:16680 (5)
CHEBI:16750 (5)
CHEBI:15741 (5)
CHEBI:17509 (5)
CHEBI:16467 (5)
CHEBI:16704 (5)
CHEBI:17053 (5)
CHEBI:16015 (5)
CHEBI:16027 (5)
CHEBI:32805 (5)
CHEBI:16919 (5)
CHEBI:17368 (5)
CHEBI:16264 (4)
CHEBI:17858 (4)
CHEBI:28300 (4)
CHEBI:9300 (4)
CHEBI:17724 (4)
CHEBI:16977 (4)
CHEBI:2274 (4)
CHEBI:17196 (4)
CHEBI:30763 (4)
CHEBI:16335 (4)
CHEBI:7916 (4)
CHEBI:17203 (4)
CHEBI:24813 (4)
CHEBI:15971 (4)
CHEBI:15318 (4)
CHEBI:18012 (4)

Metabolite Name

L-aspartic acid (3)
4-Hydroxybenzaldehyde (3)
Creatinine (3)
Creatine (3)
Hypoxanthine (3)
Acanthicifoline (2)
D-(-)-Ribose (2)
D-Gluconic acid (2)
2-Phenylethyl beta-D-glucopyranoside (2)
N-Acetyl-DL-tryptophan (2)
S-adenosyl-L-homocysteine (2)
21-Deoxycortisol (2)
Taurochenodeoxycholic acid (2)
Glycine betaine (2)
Sedoheptulose 7-phosphate (2)
N,N-Dimethylglycine (2)
Phenol (2)
Octanoic acid (2)
L-citrulline (2)
L-asparagine (2)
L-glutamic acid (2)
L-glutamine (2)
L-proline (2)
L-histidine (2)
Melibiose (2)
Orotic acid (2)
Indoxyl sulfate (2)
Pantothenate (2)
7-Methylguanine (2)
Indolelactic acid (2)

First Public Date

2026 (1)
2021 (1)

Study type

Proteomic profiling by array (1)

Release Date

2015 (5)
2016 (5)
2020 (4)
2021 (2)
2017 (2)
2025 (1)
2024 (1)
2019 (1)
2018 (1)
2014 (1)
2013 (1)
2012 (1)
2009 (1)

Lab affiliation

Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (2)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Aalto University, Espoo, Finland (1)
Director, Duke Molecular Physiology Institute, Professor Departments of Medicine (Division of Endocrinology, Metabolism, and Nutrition) and Pharmacology & Cancer Biology Duke University Medical Center (1)
Clinical Research Division Fred Hutchinson Cancer Research Center (1)
Breast Cancer Clinical Research Unit Centro Nacional de Investigaciones Oncológicas – CNIO Madrid, Spain. (1)
University of California, Irvine School of Medicine Depeartment of physiology and Biophysics (1)
Medizinisches Proteom-Center Ruhr-Universität Bochum Zentrum für klinische Forschung (ZKF) Raum 1.055 Universitätsstraße 150 44801 Bochum Germany (1)
Institute for Cell Biology, Dept. Immunology Auf der Morgenstelle 15, 72076 Tübingen, Germany Partner Site of the German Cancer Consortium (1)
Department of Cell Biology Université de Genève Faculté des Sciences Sciences III 30, quai Ernest-Ansermet CH - 1211 Genève 4 SWITZERLAND (1)
Institute of molecular virology and cell biology (1)
Institute of Molecular Systems Biology ETH Zurich (1)
ITC Life Sciences and Technology Center 3, 1st Main Road, 1st Phase, Peenya, Bangalore. 560058. India. (1)
Biologie des interactions hôte-parasite Institut Pasteur (1)
Department of Biology University of Konstanz Germany (1)
MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge Biomedical Campus CB2 0QH Cambridge UK (1)
University of California, San Diego Proteomics Mass Spectrometry Depertment (1)
Clinical Research Division, Fred Hutchinson Cancer Center, USA (1)
Department of Genetics, Maria Sklodowska-Curie National Research Institute of Oncology, Warsaw, Poland. (1)
Infection Biology Biozentrum, University of Basel CH-4056 Basel, Switzerland Phone: +41 61 207 2382 http://www.biozentrum.unibas.ch/bumann (1)
Department of Proteomics and Signal Transduction, Max Planck Institute for Biochemistry, Am Klopferspitz 18, D-82152 Martinsried, Germany. (1)
Department of Genetics, Maria Sklodowska-Curie National Research Institute of Oncology, Warsaw, Poland (1)
Queensland University of Technology (QUT), School of Biomedical Sciences, Faculty of Health, Centre for Children’s Health Research, South Brisbane, Queensland, Australia (1)
The Institute of Cancer Research, London, SW3 6JB, UK (1)
Center for Scientific Research and Higher Education of Ensenada (CICESE) (1)
Max Planck Institute for Biology of Ageing D-50931 Cologne, Germany CECAD - Cluster of Excellence University of Cologne D-50931 Cologne, Germany Center for Molecular Medicine Cologne (CMMC) University of Cologne D-50931 Cologne, Germany (1)
Department of Analytical Chemistry, Faculty of Pharmacy in Hradec Králové, Charles University (1)
Key Laboratory of Ocular Fundus Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
Department of Pathology and Immunology Washington University School of Medicine St. Louis, MO 63110 (1)
Institute of Chemistry, Universidade Federal do Rio de Janeiro Av Athos da Silveira Ramos, 149, CT- A-542, Cidade Universitária 21941-909 Rio de Janeiro, RJ Brazil (1)

Tags

xref:PubMed:34782790 (1)

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ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis

Genes are pleiotropic and getting a better knowledge of their function requires a comprehensive characterization of their mutants. Here, we generated multi-level data combining phenomic, proteomic and metabolomic acquisitions from plasma and liver tissues of two C57BL/6 N mouse models lacking the...

2021-09-01 | MTBLS1903 | MetaboLights

A mammalian transcription factor-specific peptide repository for targeted proteomics

Site-specific transcription factors (TFs) play an essential role in mammalian development and function as they are vital for the majority of cellular processes. Despite their biological importance, TF proteomic data is scarce in the literature, likely due to difficulties in detecting peptides as the...

ORGANISM(S): Mus musculus (Mouse)

2015-01-23 | PXD001212 | Pride

TARGETED PROTEOMICS FOR THE DETECTION OF SARS-COV-2 PROTEINS

TARGETED PROTEOMICS FOR THE DETECTION OF SARS-COV-2 PROTEINS: SARS-CoV-2, COVID-19, proteomics, targeted mass spectrometry, LC-MS, parallel reaction monitoring (PRM), limit of detection

ORGANISM(S): Cercopithecus aethiops (Green monkey) (Grivet)

2020-04-24 | PXD018760 | Pride

Sars-cov-2 Proteomics Lc-ms Parallel reaction monitoring (prm) Limit of detection Targeted mass spectrometry Covid-19

Implementation of a data repository-driven approach for targeted proteomics experiments by multiple reaction monitoring.

Not available

S-EPMC2706936 | biostudies-literature

Large scale cerebrospinal fluid proteomics reveals biomarkers of Multiple Sclerosis

Cerebrospinal fluid (CSF) plays critical roles in clinical diagnostics, offers a window into neuropathological mechanisms and is available at scale. To enable its large-scale proteomics characterization, we developed a high-throughput mass spectrometry-based workflow based on the Orbitrap Astral. T...

ORGANISM(S): Homo sapiens (Human)

2025-12-10 | PXD064513 | Pride

Multiple sclerosis Body fluids Csf Stellar Biomarkers Targeted mass spectrometry

MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Mouse liver assays)

We have developed MetaboKit, a comprehensive software package for compound identification and relative quantification in mass spectrometry-based untargeted metabolomics analysis. In data dependent acquisition (DDA) analysis, MetaboKit constructs a customized spectral library with compound identit...

2021-11-02 | MTBLS1266 | MetaboLights

Comprehending Meningioma Signaling Cascades Using Multipronged Proteomics Approaches & Targeted Validation of Potential Markers.

Not available

S-EPMC7482667 | biostudies-literature

Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics.

Not available

S-EPMC4331073 | biostudies-literature

MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Standard mixture assay)

2021-11-05 | MTBLS1311 | MetaboLights

YPED: an integrated bioinformatics suite and database for mass spectrometry-based proteomics research.

Not available

S-EPMC4411476 | biostudies-literature

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153 Results

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Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Study type

Release Date

Lab affiliation

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