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ProteomicsA lncRNA from the FTO locus acts as an inhibitor of the m6A writer complex and p53 tumor suppression signaling
control RNA and FTO-IT1 RNA and their interacting proteins were pulled down by biotin-streptavidin beads to see the interacting protein of FTO-IT1 RNA.
ORGANISM(S): Homo sapiens (Human) 
2024-08-09 | PXD041053 | Pride
Fto-it1 Prostate cancer 
ProteomicsCRISPR-assisted RNA-protein interaction detection (CARPID) combined with quantitative mass spectrometry was used to identify proteins interacting with the long non-coding RNA (lncRNA) Taurine Up-regulated 1 (TUG1) in HEK293T cells under physiological conditions and after Camptothecin (CPT) treatment.
This project utilized CRISPR-assisted RNA-protein interaction detection (CARPID) combined with mass spectrometry to identify proteins interacting with the long non-coding RNA (lncRNA) TUG1 in HEK293T cells. TUG1 preferentially interacts with known R-loop-associated proteins, particularly under Campt...
ORGANISM(S): Homo Sapiens (human) 
2025-07-17 | PXD049137 | JPOST Repository
ProteomicsCharacterization of R-loop-interacting proteins in embryonic stem cells reveals roles in ribosomal RNA processing and gene expression
Chromatin-associated RNAs have diverse roles in the nucleus. However, their mechanisms of action are poorly understood, in part due to the inability to identify proteins that specifically associate with chromatin-bound RNAs. Here, we address this problem for a subset of chromatin-associated RNAs tha...
ORGANISM(S): Mus musculus (Mouse) 
2021-09-17 | PXD022697 | Pride
R-loop-interacting proteins Immunoprecipitation/mass spectrometry approach Rna-protein crosslinking 
ProteomicsFISH+ is a ready-to-use proximity labeling method for simultaneous RNA visualization and RNA-interacting protein identification
FISH+ extends RNA FISH from visualization to protein identification through a simple, robust and highly accessible “watch-and-catch” proximity labeling method for punctate RNAs.
ORGANISM(S): Homo sapiens (Human) 
2026-07-26 | PXD079477 | Pride
Rna visualization Rna-interacting protein Ready-to-use 
TranscriptomicsThe Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline
In a broad range of organisms, Piwi-interacting RNAs (piRNAs) have emerged as core components of a surveillance system that protects the genome by silencing transposable and repetitive elements. A vast proportion of piRNAs is produced from discrete genomic loci, termed piRNA clusters. The molecular ...
ORGANISM(S): Drosophila melanogaster 
2013-06-07 | E-GEOD-47738 | biostudies-arrayexpress
ProteomicsIdentification of circNLK-interacting proteins by RNA pull-down coupled with LC-MS/MS in glioblastoma cells
Glioblastoma is an aggressive primary brain malignancy with a poor prognosis. In this study, we investigated the molecular function of circNLK (hsa_circ_0002103), a circular RNA that is downregulated in glioblastoma and associated with improved patient survival. To identify proteins interacting with...
ORGANISM(S): Homo sapiens (Human) 
2026-10-19 | PXD081310 | Pride
Hnrnp l Glioblastoma Rgs16 Protein-rna interaction Circular rna Hnrnpl Circnlk Rna-binding protein Rna pull-down Lc-ms/ms 
GenomicsDetection RNA targets interacting with RBM8A in AGS cells
Detection RNA targets interacting with RBM8A in AGS cells
PRJNA1237698 | ENA
GenomicsReceptor Interacting Protein 140 (Nrip1) Controls Cardiac Fuel Metabolism and Function [RNA-seq]
Receptor Interacting Protein 140 (Nrip1) Controls Cardiac Fuel Metabolism and Function [RNA-seq]
PRJNA844375 | ENA
Genomics
RNA-seq of Topless interacting protein effectors
PRJNA1129295 | ENA
GenomicsRNA Seq of rhabdomyosarcoma cells with sgRNA targeting oncofusion interacting proteins
RNA Seq of rhabdomyosarcoma cells with sgRNA targeting oncofusion interacting proteins
PRJNA1393393 | ENA
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