Roberts E E - OmicsDI

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Transcriptomics (183)
Proteomics (62)
Genomics (43)
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Models (10)
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Organisms

Homo sapiens (149)
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Arabidopsis thaliana (6)
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Escherichia coli str. K-12 substr. MG1655 (1)
Citrobacter rodentium (1)
Panopea abrupta (1)
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Organisms

Citrobacter rodentium (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (204)
pride (55)
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Disease

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Renal Wilms' tumor (1)
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Technology Type

Mass Spectrometry (55)
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418 [Affymetrix] (1)
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Publication Date

2013 (34)
2014 (32)
2011 (25)
2016 (20)
2010 (20)
2026 (16)
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2008 (12)
2015 (11)
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2012 (11)
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2020 (9)
2007 (8)
2018 (7)
2019 (7)
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2017 (6)
2006 (3)
2005 (1)
2004 (1)

UNIPROT ID/AC

P00451 (2)
P00734 (2)
P00740 (2)
P00742 (2)
P01008 (2)
P08709 (2)
P10646 (2)
P12259 (2)
P13726 (2)
P47900 (1)
P50148 (1)
Q9NQ66 (1)

CHEBI ID

CHEBI:16704 (4)
CHEBI:17568 (4)
CHEBI:17858 (4)
CHEBI:18186 (4)
CHEBI:15356 (3)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:15891 (3)
CHEBI:16010 (3)
CHEBI:16113 (3)
CHEBI:16335 (3)
CHEBI:16411 (3)
CHEBI:16449 (3)
CHEBI:16530 (3)
CHEBI:16708 (3)
CHEBI:16750 (3)
CHEBI:16811 (3)
CHEBI:17154 (3)
CHEBI:17268 (3)
CHEBI:17306 (3)
CHEBI:17385 (3)
CHEBI:17754 (3)
CHEBI:17822 (3)
CHEBI:22653 (3)
CHEBI:25017 (3)
CHEBI:25094 (3)
CHEBI:26271 (3)
CHEBI:52679 (1)
CHEBI:61033 (1)
CHEBI:68579 (1)

Metabolite Name

Alanine (2)
Asparagine (2)
Aspartate (2)
Beta-alanine (2)
Cholesterol (2)
Citrate (2)
Citrulline (2)
Cysteine (2)
Erythritol (2)
Fructose (2)
Gamma-glutamylleucine (2)
Gamma-glutamylvaline (2)
Glutamine (2)
Glycerol (2)
Glycine (2)
Isoleucine (2)
Lactate (2)
Leucine (2)
Lysine (2)
Malate (2)
Maltose (2)
Methionine (2)
Ornithine (2)
Phenylalanine (2)
Phosphate (2)
Proline (2)
Serine (2)
Threonine (2)
Tryptophan (2)
Tyrosine (2)

First Public Date

2014 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (3)
Constraint-based model (1)

Study status

Recruiting (1)

Lab affiliation

CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
lab (2)
Aalborg university (1)
Biochemistry, University of Colorado, Boulder (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Cell Biology - Emory University (1)
Center for Alzheimer’s and Related Dementias, National Institutes of Health, Bethesda, MD, USA (1)
Core Unit Proteomics, Berlin Institute of Health at Charite- Universitaetsmedizin Berlin and Max Delbrueck Center for Molecular Medicine (MDC), 13125 Berlin, Germany (1)
Department of Biochemistry University of Oxford (1)
Department of Biochemistry, Emory School of Medicine (1)
Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Genetics, Harvard Medical School Division of Genetics, Brigham and Women's Hospital Howard Hughes Medical Institute (1)
Department of Genetics, Harvard Medical School, Boston, MA 021152 Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, MA0211 Department of Cell Biology, Harvard Medical School, Boston, MA 02115 Howard Hughes Medical Institute, Boston, MA 02115 (1)
Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA Division of Genetics, Brigham & Women's Hospital, Boston, MA 02115, USA Howard Hughes Medical Institute, Boston, MA 02115, USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic (1)
Department of Microbiology and Immunology University of Michigan Medical School 1150 West Medical Center drive 6744 Med Sci II Ann Arbor, MI 48109 Phone: 734-764-3552 (1)
Department of Pathology, UAMS, Little Rock, AR, USA 2 The Winthrop P. Rockefeller Cancer Institute, UAMS, Little Rock, AR, USA (1)
Department of Translational Medicine and Physiology, Washington State University, Spokane, WA, USA (1)
Dept Biomedical Sciences, School of Medicine and Health Sciences, Institute of Neurosciences, Universitat de Barcelona, E-08036 Barcelona (1)
Dept. Biochemistry, Emory School of Medicine (1)
Director, Proteomics & Peptide Synthesis Core University of Michigan Michigan Medicine C570C MSRB II SPC 5674 (1)
Division Chair of GI/Hepatology Mayo Clinic Rochester, MN USA 55905 (1)
Environmental Research and innovation Environmental and Industrial Biotechnologies Plant Biotechnologies (1)
Florey Institute (1)
Functional Proteomics, ICR (1)
Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia 6009, Australia (1)
Head of The Steen-Laboratory, Director of Proteomics, Boston Children's Hospital, Harvard Medical School (1)
Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal (1)
Manchester Cell Matrix Centre | Division of Cancer Sciences | School of Medical Sciences | Faculty of Biology, Medicine and Health The University of Manchester | Michael Smith Building | Oxford Road | Manchester M13 9PT (1)

Keyword

Vinehealth digital app (1)

IsPrivate

False (10)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (114)
RNA-seq of coding RNA (31)
ChIP-seq (16)
Comparative genomic hybridization by array (8)
RNA-seq of coding RNA from single cells (7)
Unknown experiment type (4)
Methylation profiling by array (4)
Spatial transcriptomics by high-throughput sequencing (3)
DNA-seq (3)
Other (2)
RNA-seq of non coding RNA (2)
Baseline (1)
ChIP-chip by tiling array (1)
Human - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Single nucleus RNA sequencing (1)
Methylation profiling by high throughput sequencing (1)
Interventional (1)

Release Date

2021 (420)
2022 (411)
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2025 (366)
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2020 (316)
2019 (224)
2018 (215)
2016 (193)
2017 (171)
2015 (152)
2014 (150)
2013 (131)
2011 (101)
2012 (99)
2010 (67)
2026 (63)
2008 (48)
2009 (37)
2007 (23)
2006 (15)
2004 (8)
2003 (8)
2005 (6)
2000 (4)
1999 (4)
2002 (3)
2001 (3)
1998 (3)
1997 (1)

Location

United Kingdom (1)

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Improved transcription and translation with L-leucine stimulation of mTORC1

Roberts syndrome (RBS) is a human developmental disorder caused by mutations in the cohesin acetyltransferase ESCO2. We previously reported that mTORC1 was inhibited and overall translation was reduced in RBS cells. Treatment of RBS cells with L-leucine partially rescued mTOR function and protein sy...

ORGANISM(S): Homo sapiens

2016-01-15 | E-GEOD-64962 | biostudies-arrayexpress

Gene expression in liver tissues derived from wild-type and Siglec-E-deficient mice at 55 weeks of age

We show that mice lacking Siglec-E, the main member of the CD33rSiglec family, exhibit reduced survival. Removal of Siglec-E causes the development of exaggerated signs of aging at the molecular, structural, and cognitive level. We found that accelerated aging was related both to an unbalanced ROS m...

ORGANISM(S): Mus musculus

2016-01-15 | E-GEOD-64760 | biostudies-arrayexpress

Prospective associations between nicotine type and the continuation of youth e-cigarette use.

Not available

S-EPMC12659524 | biostudies-literature

The case of young people who use e-cigarettes infrequently: Who is this population? What becomes of them?

Not available

S-EPMC12645567 | biostudies-literature

Multi-Omic Evidence of Brain Region Specific APOE Genotype Perturbations in Alzheimer's Disease

Simultaneous extraction of proteins and lipids from human frontal cortex and cerebellum brain tissue was performed using the MPLEx procedure for both control and Alzheimer's disease patients. The isolated proteins were then reduced, alkylated, tryptically digested and evaluated with LC-IMS-MS. The p...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2023-08-08 | MSV000092627 | MassIVE

High resolution view of bacteriophage lambda gene expression by ribosome profiling

Bacteriophage lambda is one of the most extensively studied organisms, and has been a primary model for understanding basic modes of genetic regulation. Here we examine the progress of lambda gene expression during phage development by ribosome profiling, and thereby provide a very high resolution ...

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2013-07-01 | E-GEOD-47509 | biostudies-arrayexpress

Collagen-like proteins in pathogenic E. coli strains.

Not available

S-EPMC3368898 | biostudies-literature

Juul and the upsurge of e-cigarette use among college undergraduates.

Not available

S-EPMC7483833 | biostudies-literature

IgA-coated E. coli enriched in Crohn's disease spondyloarthritis promote T_H17-dependent inflammation.

Not available

S-EPMC6159892 | biostudies-literature

Calicivirus translation initiation requires an interaction between VPg and eIF 4 E.