Roche Paul P - OmicsDI

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Transcriptomics (223)
Unknown (178)
Proteomics (25)
Genomics (4)
Metabolomics (2)

Organisms

Homo sapiens (117)
Mus musculus (56)
Arabidopsis thaliana (12)
Rattus norvegicus (11)
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biostudies-arrayexpress (227)
pride (23)
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Mass Spectrometry (23)
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Instrument Platform

Illumina HiSeq 2000 (5)
Illumina HiSeq 4000 (2)
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2014 (30)
2013 (30)
2010 (28)
2011 (27)
2012 (22)
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2017 (4)
2007 (4)
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2004 (1)
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2023 (1)

CHEBI ID

CHEBI134216 (1)
CHEBI15354 (1)
CHEBI15544 (1)
CHEBI15558 (1)
CHEBI15603 (1)
CHEBI15614 (1)
CHEBI15676 (1)
CHEBI15698 (1)
CHEBI15724 (1)
CHEBI15728 (1)
CHEBI15741 (1)
CHEBI16020 (1)
CHEBI16220 (1)
CHEBI16259 (1)
CHEBI16318 (1)
CHEBI16344 (1)
CHEBI16347 (1)
CHEBI16349 (1)
CHEBI16359 (1)
CHEBI16411 (1)
CHEBI16414 (1)
CHEBI16437 (1)
CHEBI16450 (1)
CHEBI16467 (1)
CHEBI16534 (1)
CHEBI16543 (1)
CHEBI16610 (1)
CHEBI16643 (1)
CHEBI16704 (1)
CHEBI16737 (1)

Metabolite Name

1-Aminocyclopropanecarboxylic acid (1)
1-Methyladenosine (1)
15(S)-HETE (1)
2,6-Dihydroxybenzoic acid (1)
2-Hydroxy-3-methylbutyric acid (1)
2-Hydroxycaproic acid (1)
2-Methylhippuric acid (1)
2-Oxoglutaric acid (1)
3-Hydroxybutyric acid (1)
3-Hydroxyphenylacetic acid (1)
3-Hydroxyproline (1)
3-Indoxylsulfuric acid (1)
3-Methyl-2-oxovaleric acid (1)
3-Ureidopropionic acid (1)
4,6-Dioxoheptanoic acid (1)
4-Guanidinobutyric acid (1)
4-Hydroxybenzaldehyde (1)
4-Hydroxyhippuric acid (1)
4-Nitrocatechol (1)
4-pyridoxic acid (1)
5-Aminolevulinic acid (1)
5-Hydroxyferulic acid (1)
5-Methylcytidine (1)
5-O-Caffeoylshikimic acid (1)
7-Methylguanine (1)
?-Hydroxyisovaleric acid (1)
?-Muricholic acid (1)
ADP (1)
Acetylcarnitine (1)
Aconitic acid (1)

Study type

Transcription profiling by array (177)
Comparative genomic hybridization by array (12)
RNA-seq of coding RNA (7)
ChIP-chip by tiling array (6)
ChIP-chip by array (5)
Other (4)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by tiling array (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Unknown experiment type (1)
Cell line - One-color microarray (1)
Genotyping by array (1)
Hi-C (1)
ChIP-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2014 (34)
2021 (30)
2013 (30)
2011 (30)
2010 (30)
2022 (28)
2015 (24)
2025 (22)
2012 (22)
2019 (21)
2023 (20)
2009 (18)
2020 (15)
2016 (15)
2024 (15)
2008 (12)
2017 (11)
2018 (10)
2006 (6)
2026 (5)
2007 (4)
2005 (2)
2004 (1)

Lab affiliation

95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany (1)
CRCL UMR Inserm U1052, CNRS 5286, UCBL, CLB (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Univeristy of Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Diseases, Department of Medicine, University of Cambridge, (1)
Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3C584 CG Utrecht, The Netherlands (1)
Complex Analysis Group BRIC-Translational Health Science and Technology Institute Dept of Biotechnology, Govt Of India NCR Biotech Science Cluster, 3rd Milestone, Faridabad–Gurugram Expressway, PO box #04, Faridabad- 121001 (Haryana) (1)
Department of Cell Biology Harvard Medical School Boston, MA 02115 (1)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Infection and Immunity Program Room 214, level 2, 15 Innovation Walk Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia (1)
Head of the Division of Systems Biology, Department of Protein Science, at the Royal Institute of Technology (KTH), Stockholm, Sweden (1)
KTH Royal Institute of Technology, Departement of Protein Science, Division of Systems Biology (1)
Macquarie Medical School (1)
Member Cell and Molecular Biology Department St. Jude Children's Research Hospital Memphis, TN-38105 (1)
Paul Scherrer Institute Center for Radiopharmaceutical Sciences Forschungsstrasse 111 5232 Villigen PSI Switzerland (1)
Prof. Kathryn S. Lilley Cambridge Centre for Proteomics Department of Biochemistry University of Cambridge and Milner Therapeutics Institute +441223760255 www.bio.cam.ac.uk/proteomics/ @lilley_ks @CamCProteomics secretary: secretariat@bioc.cam.ac.uk (1)
Research Assistant Professor Laboratory of Cellular and Structural Biology The Rockefeller University, USA (1)
Section of Investigative Medicine Imperial College London (1)
St Anna CCRI (Children's Cancer Research Institute), Vienna,Austria CeMM Center for Molecular Medicine, Vienna, Austria (1)
Team Lead in Proteomics Head of the Proteomics Research Translational Technology Platform UCL Cancer Institute, Paul O’Gorman Building 72 Huntley Street, London, WC1E 6DD, UK (1)
Team Lead in Proteomics Head of the Proteomics Research Translational Technology Platform, UCL Cancer Institute, Paul O’Gorman Building 72 Huntley Street, London, WC1E 6DD, UK (1)
The Francis Crick Institute, Cell Cycle Laboratory (1)
University Medical Center Goettingen, Institute of Clinical Chemistry, Core Facility Proteomics (1)
University of Dundee, School of Life Sciences (1)

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A compendium of antibiotic-induced transcription profiles reveals broad regulation of P. multocida virulence genes

Treatment of bacteria with antibiotics at or close to the inhibitory concentration leads to specific transcriptional responses often affecting target genes and targets pathways. A dataset of transcriptional profiles (compendium) induced by antibiotics with known mode-of-action (MoA) can be used to g...

ORGANISM(S): Pasteurella multocida

2008-06-01 | E-GEOD-10051 | biostudies-arrayexpress

Alectinib versus chemotherapy in crizotinib-pretreated anaplastic lymphoma kinase (ALK)-positive non-small-cell lung cancer: results from the phase III ALUR study.

Not available

S-EPMC6005013 | biostudies-literature

A Tridimensional Model for NK Cell-Mediated ADCC of Follicular Lymphoma.

Not available

S-EPMC6702952 | biostudies-literature

Structural Basis for Allosteric Ligand Recognition in the Human CC Chemokine Receptor 7.

Not available

S-EPMC6709783 | biostudies-literature

Detection of Babesia RNA and DNA in whole blood samples from US blood donations.

Not available

S-EPMC9290686 | biostudies-literature

Evidence for an early endometrial response to pregnancy in cattle: both dependent upon and independent of interferon tau

The aims of this study were to 1) identify the earliest transcriptional response of the bovine endometrium to the presence of the conceptus (using RNAseq), 2) investigate if these genes are regulated by interferon tau (IFNT) in vivo, and 3) determine if they are predictive of the pregnancy status of...

ORGANISM(S): Bos taurus

2014-04-01 | E-GEOD-56392 | biostudies-arrayexpress

Sex of Blood

Blood samples were taken at 1:00 pm +/- 1 h (Potassium-EDTA-monovettes, Sarstedt, Numbrecht, Germany) to control for circadian influences on gene expression. Blood was taken from normal male controls, normal female controls as well as different patients with disorders of sex development leading to a...

ORGANISM(S): Homo sapiens

2009-07-13 | E-GEOD-11235 | biostudies-arrayexpress

Reversible and irreversible differentiation of cardiac fibroblasts

Aim: Differentiation of cardiac fibroblasts (Fb) into myofibroblasts (MyoFb) is responsible for connective tissue buildup in myocardial remodeling. We examined reversibility of MyoFb differentiation. Methods and Results: Adult rat cardiac Fb were cultured on a plastic substratum providing mechanical...

ORGANISM(S): Rattus norvegicus

2014-01-07 | E-GEOD-51824 | biostudies-arrayexpress

Final efficacy and safety data, and exploratory molecular profiling from the phase III ALUR study of alectinib versus chemotherapy in crizotinib-pretreated ALK-positive non-small-cell lung cancer.

Not available

S-EPMC8777286 | biostudies-literature

Detection of ALK fusion transcripts in plasma of non-small cell lung cancer patients using a novel RT-PCR based assay.

Not available

S-EPMC8263889 | biostudies-literature