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GenomicsIdentification of RoxS targets
Identification of RoxS targets
PRJNA954386 | ENA
TranscriptomicsTranscription profiling of Pseudomonas putida wild type and roxS mutants to define the RoxS/RoxR regulon
Whole-genome transcriptional analysis has been performed to define the P. putida RoxS/RoxR regulon.
Transcriptome profiles of P. putida roxS cells harvested in stationary growth phase were compared with those of the wild-type strain.
ORGANISM(S): Pseudomonas putida 
2009-01-01 | E-MEXP-1684 | biostudies-arrayexpress
ProteomicsIdentification of an RNA sponge that controls the levels, processing and efficacy of the RoxS riboregulator of central metabolism in B. subtilis
Only a few small regulatory RNAs (sRNAs) have been characterized in B. subtilis, the paradigm of Gram-positive bacteria, and one of the major challenges is target identification. Here we use global in vivo RNA psoralen cross-linking to identify RNA-RNA partners in Bacillus subtilis. Two sRNAs, RoxS ...
ORGANISM(S): Bacteria Bacillus subtilis 
2021-09-08 | PXD015051 | Pride
Metabolism Roxs Rosa Bacillus subtilis Rnas 
TranscriptomicsIdentification of RoxS targets
To identify RoxS targets and do the comparison with RoxS targets identified by pulsed SILAC experiment
ORGANISM(S): Bacillus subtilis 
2023-04-17 | GSE229415 | GEO
UnknownNew RoxS sRNA Targets Identified in Bacillus subtilis by Pulsed SILAC.
Not available
S-EPMC10433868 | biostudies-literature
UnknownIdentification of an RNA sponge that controls the RoxS riboregulator of central metabolism in Bacillus subtilis.
Not available
S-EPMC8216469 | biostudies-literature
TranscriptomicsIdentification of RNA-RNA interactions in Bacillus Subtilis by in vivo UV crosslinking
Small RNAs (sRNAs) are a taxonomically-restricted but transcriptomically-abundant class of post-transcriptional regulators. While potentially of importance, we know the function of few. This is in no small part because we lack global-scale methodology enabling target identification, this being espec...
ORGANISM(S): Bacillus subtilis subsp. subtilis 
2021-08-25 | E-MTAB-8490 | biostudies-arrayexpress
ProteomicsNew RoxS sRNA targets identified in B. subtilis by pulsed SILAC
Non-coding RNA (sRNA) are playing a key role in gene expression in bacteria. In general, sRNA regulates gene expression by base-pairing with ribosome binding sites to block translation. The modification of the ribosome trafficking generally affects mRNA stability. However, few examples have been des...
ORGANISM(S): Bacillus Subtilis Subsp. Subtilis Str. 168 (ncbitaxon:224308) 
2023-01-18 | MSV000091084 | MassIVE
UnknownA nitric oxide regulated small RNA controls expression of genes involved in redox homeostasis in Bacillus subtilis.
Not available
S-EPMC4409812 | biostudies-literature
UnknownsRNA-mediated activation of gene expression by inhibition of 5'-3' exonucleolytic mRNA degradation.
Not available
S-EPMC5419742 | biostudies-literature
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