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MetabolomicsEvidence for quorum sensing and differential metabolite production by Ruegeria pomeroyi in response to DMSP
Microbial alteration and remineralization of organic matter in the ocean play essential roles in the carbon cycle. The impact of individual compounds as either growth substrates or infochemicals is still poorly constrained in models, particularly for organisms with relatively versatile genomes. Here...
2015-01-29 | MTBLS157 | MetaboLights
MetabolomicsRuegeria pomeroyi transporter mutant substrate drawdown
Not available
ORGANISM(S): Ruegeria pomeroyi 
ST002381 | MetabolomicsWorkbench
TranscriptomicsExperimental identification of small non-coding RNAs in the model marine bacterium Ruegeria pomeroyi DSS-3
In oligotrophic ocean waters where bacteria are often subjected to chronic nutrient limitation, community transcriptome sequencing has pointed to the presence of highly abundant small RNAs (sRNAs). The role of sRNAs in regulating response to nutrient stress was investigated in a model heterotrophic ...
ORGANISM(S): Ruegeria pomeroyi DSS-3 
2016-02-27 | E-MTAB-4468 | biostudies-arrayexpress
ProteomicsProteomic changes of Ruegeria pomeroyi grown on cysteinolic acid
Proteomic analysis to identify the pathway responsible for the breakdown of cysteinolic acid by Ruegeria pomeroyi.
ORGANISM(S): Ruegeria pomeroyi DSS-3 
2025-12-12 | PXD059358 | Pride
Cysteinolic acid Ruegeria pomeroyi 
TranscriptomicsGlobal response of Silicibacter pomeroyi strain DSS3 to dimethyl sulfoniopropionate (DMSP)
Dimethylsufoniopropionate (DMSP) is an important and abundant organic sulfur compound and an important substrate for marine bacterioplankton. The Roseobacter clade of marine alpha-proteobacteria, including Silicibacter pomeroyi strain DSS3, are known to be a key phylogenetic group involved in DMSP d...
ORGANISM(S): Ruegeria pomeroyi 
2007-12-09 | E-GEOD-5480 | biostudies-arrayexpress
ProteomicsRuegeria pomeroyi growth curve
The ubiquitous heterotrophic marine bacterium, Rugeria pomeroyi, was experimentally cultured under both environmentally realistic carbon conditions and with a tracer-level addition of 13C-labeled leucine. Bacterial protein biosynthesis was tracked through exponential and stationary growth phases. Th...
ORGANISM(S): Ruegeria pomeroyi 
2019-07-31 | PXD008661 | Pride
Ruegeria pomeroyi Growth curve Bacteria 13c leucine 
TranscriptomicsGlobal gene expression of Ruegeria pomeroyi strain DSS3 in response to glucose, ammonium, phosphate, or sulfate limitation
We used the previously designed oligonucleotide-based microarray (Burgmann et al. Environmental Microbiology 2007, 9: 2742-2755) to detect the transcripts of R. pomeroyi DSS-3 genes when the cells were cultured under steady-state carbon (glucose), nitrogen (ammonium), phosphorus (phosphate), or sulf...
ORGANISM(S): Ruegeria pomeroyi DSS-3 
2011-09-30 | E-GEOD-27032 | biostudies-arrayexpress
GenomicsRuegeria pomeroyi DSS-3
Ruegeria pomeroyi DSS-3 Mutation Accumulation
PRJNA320454 | ENA
GenomicsRuegeria pomeroyi DSS-3
Ruegeria pomeroyi DSS-3 Mutation Accumulation Project
PRJNA320442 | ENA
TranscriptomicsGlobal gene expression of Ruegeria pomeroyi DSS-3 during ammonium-limited, ribose phosphate-, methylphosphonate-, or potassium phosphate-excess growth regimes or during potassium phosphate-limited, ammonium-excess regime
We used the previously designed oligonucleotide microarrays (BM-CM-
ORGANISM(S): Ruegeria pomeroyi DSS-3 
2014-06-02 | E-GEOD-38740 | biostudies-arrayexpress
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