Saw Saw S - OmicsDI

OmicsDI

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Unknown (2341)
Transcriptomics (87)
Genomics (29)
Proteomics (29)
Metabolomics (4)

Organisms

Homo sapiens (42)
Rattus norvegicus (31)
Rattus rattus (24)
Mus musculus (15)
Saccharomyces cerevisiae (4)
Candidatus Pelagibacter ubique HTCC1062 (2)
Staphylococcus aureus (2)
Escherichia coli (2)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
Arabidopsis thaliana (1)
Candidatus Pelagibacter sp. HTCC7211 (1)
Candidatus Pelagibacter ubique HTCC1002 (1)
Saccharomyces cerevisiae x Saccharomyces uvarum (1)
Saccharomyces uvarum (1)
Saccharomyces x bayanus (1)
Gasterosteus aculeatus (1)
Anthozoa (1)
Asterias rubens (1)
Brachyspira pilosicoli P43/6/78 (1)
Cavia porcellus (1)
Craspedocephalus gramineus (1)
Craspedocephalus malabaricus (1)
Cricetulus griseus (1)
Echis carinatus (1)
Exaiptasia diaphana (1)
Hypnale hypnale (1)
Ictidomys tridecemlineatus (1)
Staphylococcus aureus subsp. aureus str. Newman (1)

Organisms

Staphylococcus aureus (2)
Candidatus Pelagibacter ubique HTCC1062 (1)
Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (82)
pride (27)
EGA (18)
ENA (9)
geo (6)
MetaboLights (4)
EVA (1)
MassIVE (1)
PanoramaPublic (1)

Tissue

Kidney (3)
Permanent cell line cell (3)
Colon (2)
Heart (2)
Blood plasma (1)
Cell culture (1)
Cell suspension culture (1)
Choroid (1)
Coelomocyte (1)
Epithelial cell (1)
Epithelium (1)
Liver (1)
Long bone (1)
Plasma cell (1)
Quadriceps (1)
Retina (1)
Sclera (1)
Stem cell (1)
Tooth (1)
Venom (1)
Venom gland (1)
Whole body (1)

Disease

COVID-19 (2)
Uninjured (1)
Insulitis and diabetes (1)
Head and neck squamous cell carcinoma (1)
Autism spectrum disorder (1)
Colon cancer (1)
Heart disease (1)
Nephrolithiasis (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (27)
Shotgun proteomics (15)
Bottom-up proteomics (8)
Mass spectrometry (3)
HDMSE (3)
Data-dependent acquisition (2)
Affymetrix/Illumina (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Proteogenomics (1)

Instrument Platform

DNBSEQ-T7 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Affymetrix Fluidics Station 400 (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
- (1)
LTQ Orbitrap Elite (1)
Velos Plus (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2005 (43)
2022 (8)
2025 (7)
2026 (6)
2006 (6)
2013 (5)
2012 (5)
2007 (5)
2021 (5)
2023 (5)
2018 (3)
2016 (3)
2015 (3)
2008 (3)
2020 (3)
2014 (2)
2010 (2)
2017 (2)
2019 (2)
2024 (2)
2011 (1)
2009 (1)

CHEBI ID

CHEBI:10642 (1)
CHEBI:132540 (1)
CHEBI:132544 (1)
CHEBI:134127 (1)
CHEBI:140940 (1)
CHEBI:140943 (1)
CHEBI:140947 (1)
CHEBI:140948 (1)
CHEBI:140951 (1)
CHEBI:141075 (1)
CHEBI:142346 (1)
CHEBI:15725 (1)
CHEBI:15756 (1)
CHEBI:16554 (1)
CHEBI:16610 (1)
CHEBI:17148 (1)
CHEBI:17234 (1)
CHEBI:17306 (1)
CHEBI:17431 (1)
CHEBI:17505 (1)
CHEBI:17754 (1)
CHEBI:17822 (1)
CHEBI:17859 (1)
CHEBI:17992 (1)
CHEBI:18127 (1)
CHEBI:18237 (1)
CHEBI:22599 (1)
CHEBI:22605 (1)
CHEBI:23098 (1)
CHEBI:24168 (1)

Metabolite Name

(R)-pantothenate (1)
(S)-3-hydroxy-3-methylglutaryl-CoA (1)
1,3-diaminopropane (1)
1-deoxy-D-xylulose 5-phosphate (1)
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (1)
2,3-diphosphoglycerate (1)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate (1)
2-C-methyl-D-erythritol 4-phosphate (1)
2-Monolinoleoylglycerol (1)
2-ketoglutarate (1)
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol (1)
2-phospho-D-glycerate (1)
3-dehydroshikimate (1)
3-hydroxybutyryl-coenzyme A (1)
3-phospho-D-glycerate (1)
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol (1)
4-aminobutanoate (1)
5-phospho-alpha-D-ribose 1-diphosphate (1)
ADP (1)
AMP (1)
ATP (1)
C12:0 (1)
C14:0 (1)
C16:0 (1)
C18:0 (1)
C18:1 (1)
C20:0 (1)
C20:5 (1)
C22:6 (1)
CDP (1)

First Public Date

2025 (3)
2022 (2)
2024 (1)
2019 (1)
2017 (1)
2014 (1)

Classification

bacteria (2)

Study type

Transcription profiling by array (71)
RNA-seq of coding RNA (4)
Transcription profiling by RT-PCR (2)
Spatial transcriptomics by high-throughput sequencing (2)
Comparative genomic hybridization by array (2)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (337)
2022 (286)
2023 (284)
2021 (257)
2024 (254)
2020 (205)
2019 (150)
2018 (124)
2017 (90)
2014 (70)
2016 (66)
2015 (62)
2013 (47)
2005 (44)
2012 (41)
2026 (38)
2011 (15)
2007 (12)
2010 (11)
2009 (10)
2008 (10)
2006 (6)
1999 (2)
2004 (1)
2002 (1)

Lab affiliation

Department of Chemistry, King’s College London, SE1 1DB, London, UK Faculty of Biology, Medicine and Health, School of Biological Sciences, The University of Manchester, M13 9PT, Manchester, UK Manchester Institute of Biotechnology, The University of Manchester, M1 7DN, Manchester, UK (2)
The Forsyth Institute (2)
University of Victoria (2)
Assistant Professor, Evolutionary Venomics Lab, Center for Ecological Sciences, Indian Institute of Science, Bangalore, India (1)
Boston University (1)
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN (1)
Department of Biological and Environmental Science & Department of Chemistry, Nanoscience Center, University of Jyvaskyla, Finland (1)
Department of Chemistry, University of Washington, Seattle, WA, USA (1)
Department of Marine Biology, University of Haifa, Israel (1)
Department of Medical Biochemistry and Cell biology, University of Gothenburg, Sweden (1)
Forensic Science Research Group, Faculty of Health and Life Sciences, Applied Sciences, Northumbria University, NE1 8ST, Newcastle Upon Tyne, UK (1)
Indian Institute of Science, Bangalore (1)
Johns Hopkins University, Chemistry Department, Fried Lab, USA (1)
Laboratory of Regulation of Gene Expression, Institute of Cytology, Russian Academy of Sciences (1)
School of Biological Sciences, Victoria University of Wellington (1)
School of Biological Sciences, Victoria University of Wellington, New Zealand (1)
Singapore Eye Research Institute, Singapore National Eye Centre, Duke-NUS, Medical School, Singapore, Singapore (1)
Stanford University School of Medicine, Stanford, CA 94305, USA (1)
Stephen Fried Johns Hopkins University Fried Lab Chemistry Department (1)
The University of Manchester (1)
University of Applied Sciences Albstadt-Sigmaringen, Department of Life Sciences, Anton-Günther-Straße 51, 72488 Sigmaringen, Germany (1)
University of Groningen, Department of Pharmacy, Analytical Biochemistry, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands, Tel. +31-50-363-3338 (secr. 3336), Fax +31-50-363-7582, r.p.h.bischoff@rug.nl. (1)
University of Nebraska-Lincoln (1)
sun yat-sen memorial hospital (1)