Schilling K K - OmicsDI

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Unknown (523)
Proteomics (66)
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Andropogon gerardi (29)
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Human alphaherpesvirus 1 strain 17 (29)
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Technology Type

Mass Spectrometry (29)
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Instrument Platform

TripleTOF 6600 (10)
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NextSeq 500 (2)
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ABI SCIEX QSTAR XL System (1)

Publication Date

2024 (15)
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2022 (11)
2021 (9)
2020 (7)
2015 (6)
2016 (6)
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2010 (4)
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2017 (4)
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2012 (2)
2013 (1)
2014 (1)

UNIPROT ID/AC

P20963 (2)
P29350 (2)
P35225 (2)
P78552 (2)
P29597 (2)
O60674 (2)
P14753 (2)
P42229 (2)
P51692 (2)
P24394 (2)
P02340 (1)
Q08048 (1)
P46414 (1)
P31750 (1)
Q14627 (1)
P22629 (1)
Q61501 (1)
P13405 (1)
P97377 (1)
P07321 (1)
Q63844 (1)
O14543 (1)

ENSEMBL ID

ENSMUSG00000029711 (1)
ENSMUSG00000006235 (1)

CHEBI ID

CHEBI:17562 (4)
CHEBI:16704 (4)
CHEBI:17748 (3)
CHEBI:15428 (3)
CHEBI:45996 (3)
CHEBI:16020 (3)
CHEBI:16335 (3)
CHEBI:15741 (3)
CHEBI:18012 (3)
CHEBI:16750 (3)
CHEBI:17802 (3)
CHEBI:17596 (3)
CHEBI:33699 (2)
CHEBI:137590 (2)
CHEBI:74470 (2)
CHEBI:178092 (2)
CHEBI:178091 (2)
CHEBI:19068 (2)
CHEBI:178090 (2)
CHEBI:72426 (2)
CHEBI:134587 (2)
CHEBI:85853 (2)
CHEBI:19688 (2)
CHEBI:65293 (2)
CHEBI:65302 (2)
CHEBI:21891 (2)
CHEBI:19229 (2)
CHEBI:19065 (2)
CHEBI:19227 (2)
CHEBI:16991 (1)

Metabolite Name

Uridine (3)
Cytidine (3)
2-methylguanosine (2)
1-methylinosine (2)
2-methyladenosine (2)
8-methyladenosine (2)
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2'-O-methylinosine (2)
2'-O-methyluridine (2)
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2'-O-methylcytidine (2)
Tryptamine (2)
2'-O-methyladenosine (2)
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3-methylcytidine (2)
Tyrosol (2)
4-Pyridoxic acid (2)
Guanosine (2)
Inosine (2)
Pseudouridine (2)
5-methyluridine (2)
1-methylguanosine (2)
7-methylguanosine (2)
5-methylcytidine (2)
1-methyladenosine (2)

First Public Date

2020 (1)

Modelling Approach

Ordinary differential equation model (5)
Constraint-based model (3)

Lab affiliation

Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
(1) Laboratory of Angiogenesis and Vascular Metabolism, Vesalius Research Center, Department of Oncology, University of Leuven, Leuven, B-3000, Belgium; (2) Laboratory of Angiogenesis and Vascular Metabolism, Vesalius Research Center, VIB, Leuven, B-3000, Belgium (1)
Boston University School of Medicine Center for Biomedical Mass Spectrometry (1)
Cardiovascular and Metabolic Sciences, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), 13125 Berlin, Germany (1)
Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada (1)
Department of Anesthesiology, University of California San Diego (1)
Division Systems Biology of Signal Transduction German Cancer Research Center (DKFZ) (1)
F.M Kirby Neurobiology Center, Boston Children’s Hospital, Boston, MA, USA. Harvard Medical School, Boston, MA, USA (1)
German Cancer Research Center (DKFZ) (1)
German Cancer Research Center Heidelberg, Division: Systems Biology of Signal Transduction (1)
German Cancer Research Center Heidelberg, Division: Systems Biology of Singal Transduction (1)
Institute for Surgical Pathology, Medical Center and Faculty of Medicine - University of Freiburg, Freiburg, Germany (1)
Institute of Biochemistry II, Faculty of Medicine, University Hospital, Goethe-University, D-60590 Frankfurt am Main, Germany Frankfurt Cancer Institute, D-60590 Frankfurt am Main, Germany; Cardio-Pulmonary Institute, D-60590 Frankfurt am Main, Germany (1)
Institute of Clinical Pharmacology, Goethe-University, Frankfurt, Germany (1)
Institute of Exptl. Internal Medicine Medical Faculty, University Magdeburg Leipzigerstr. 44 39120 Magdeburg, Germany (1)
Institute of Molecular Medicine and Cell Research University of Freiburg, Germany (1)
Institute of Molecular Medicine and Cell Research University of Freiburg, Stefan Meier Strasse 17, 79104 Freiburg, Germany (1)
Institute of Molecular Medicine and Cell Research, University of Freiburg, Germany (1)
Institute of Surgical Pathology Faculty of Medicine - University of Freiburg (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
National Laboratory of Biosciences (LNBio/CNPEM) (1)
OBMS (1)
PD Dr. Oliver Schilling Heisenberg Fellow Institute of Molecular Medicine and Cell Research University of Freiburg Stefan-Meier-Str. 17, Room 02 027 D-79104 Freiburg, Germany +49 761 203 9615 oliver.schilling@mol-med.uni-freiburg.de (1)
Systems Biology of Signal Transduction, German Cancer Research Center (DKFZ), Heidelberg, Germany (1)
Systems Biology of Signal Transduction, German Cancer Research Center Heidelberg, Germany (1)
University Medicine Greifswald Interfaculty Institute for Genetics and Functional Genomics Department of Functional Genomics ZIK-FunGene Junior Research Group Applied Proteomics Friedrich-Ludwig-Jahn-Str. 15a D-17487 Greifswald Germany Phone: +49-3834-865887 Fax: +49-3834-86795887 (1)
University of Freiburg (1)
Weill Cornell Medicine, Department of Biochemistry 1300 York Avenue, Box #63 Room A-108 New York, NY 10065 (1)

IsPrivate

False (8)

Model Flag

Non Kinetic (3)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (4)
RNA-seq of coding RNA (4)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2025 (71)
2021 (69)
2024 (68)
2023 (63)
2022 (61)
2019 (36)
2020 (35)
2018 (22)
2017 (16)
2014 (16)
2015 (14)
2012 (12)
2016 (12)
2026 (7)
2010 (6)
2013 (5)
2011 (5)
2009 (3)
2005 (3)
2003 (3)
2007 (2)
2006 (2)
2004 (1)
2001 (1)
2000 (1)

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A human endogenous retrovirus encoded protease potentially cleaves numerous cellular proteins

The human genome consists of considerable portions derived from retroviruses typically inherited already for millions of years. So-called human endogenous retroviruses (HERVs) are usually severely mutated, yet some coding-competent HERV sequences exist. The HERV-K(HML-2) group includes evolutionaril...

ORGANISM(S): Homo sapiens (Human)

2019-09-02 | PXD010159 | Pride

Protease N-terminomics

A human endogenous retrovirus encoded protease potentially cleaves numerous cellular proteins

Background: The human genome consists of considerable portions derived from retroviruses inherited for millions of years. So-called human endogenous retroviruses (HERVs) are usually severely mutated, yet some coding-competent HERVs exist. The HERV-K(HML-2) group includes evolutionarily young proviru...

ORGANISM(S): Homo sapiens (Human)

2019-09-02 | PXD013296 | Pride

Proteolysis Retrovirus

Reed2003 - Genome-scale metabolic network of Escherichia coli (iJR904)

Reed2003 - Genome-scale metabolic network of Escherichia coli (iJR904) This model is described in the article: An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Reed JL, Vo TD, Schilling CH, Palsson BO. Genome Biol. 2003; 4(9): R54 Abstract: BA...

2015-07-30 | MODEL1507180060 | BioModels

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR).

Not available

S-EPMC193654 | biostudies-literature

Graphene liquid crystal retarded percolation for new high-k materials.

Not available

S-EPMC4660061 | biostudies-literature

Reaction of an Ion and a Free Radical near 0 K: He⁺ + NO → He + N⁺ + O.

Not available

S-EPMC9940198 | biostudies-literature

Genome analysis of the novel putative rotavirus species K.

Not available

S-EPMC10410577 | biostudies-literature

Zinc- and iron-dependent cytosolic metallo-beta-lactamase domain proteins exhibit similar zinc-binding affinities, independent of an atypical glutamate at the metal-binding site.

Not available

S-EPMC1134682 | biostudies-literature

Mueller2015 - Hepatocyte proliferation, T160 phosphorylation of CDK2

Mueller2015 - Hepatocyte proliferation, T160 phosphorylation of CDK2 This model is described in the article: T160-phosphorylated CDK2 defines threshold for HGF-dependent proliferation in primary hepatocytes. Mueller S, Huard J, Waldow K, Huang X, D'Alessandro LA, Bohl S, Bör...

2024-09-02 | BIOMD0000000568 | BioModels

C-terminomics - 2nd pre-pullout experiment

2nd pre-pullout experiment

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2010-06-04 | PRD000201 | Pride

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621 Results

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