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ProteomicsCross-linked amyloidogenic proteins as potential aggregation inhibitors
Amyloidogenic proteins, characterized by their ability to form fibrillar aggregates with β sheet structure play an important role in several degenerative diseases, including Parkinson’s disease. Numerous amyloidogenic proteins, such as α synuclein, are intrinsically disordered (or contain ID regions...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2023-10-24 | PXD042501 | Pride
Lc-ms/ms Α-synuclein Cross-linking ms 
ProteomicsOptimum collision energies for proteomics: The impact of ion mobility separation
We performed LC-MS/MS measurements on a Waters Select Series Cyclic IMS QTof mass spectrometer with varied CE settings both with and without IMS. We investigated the CE dependence of identification score, using Byonic search engine, for more than 1000 tryptic peptides from HeLa digest standard. We d...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-12-20 | MSV000090944 | MassIVE
ProteomicsCollision energies on QTof and Orbitrap instruments: How to make proteomics measurements comparable?
Comparison of LeuEnk, enolase, and HeLa tryptic peptides MS/MS spectra obtained on a Bruker QTof CID and a Thermo Q-Exactive Focus Orbitrap HCD instrument as a function of collision energy using the similarity index.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-11-11 | MSV000086434 | MassIVE
ProteomicsSpatial evaluation of transcriptomic and proteomic data in ALK rearranged lung cancer - a pilot study
Spatial evaluation of transcriptomic and proteomic data in ALK rearranged lung cancer - a pilot study
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-04-20 | MSV000089286 | MassIVE
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