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ProteomicsMycobacterium tuberculosis under starvation
Mycobacterium tuberculosis was grown in Middlebrook 7H9 medium supplemented with 0.4% glycerol, 0.085% NaCL, 0.5% BSA and 0.05% Tyloxapol in roller bottle culture (2 rpm at 37°C). To induce starvation, exponentially growing bacteria were washed and resuspended in PBS supplemented with 0.025% Tyloxap...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2013-11-22 | PXD000483 | Pride
Mycobacterium tuberculosis Starvation Dda 
ProteomicsMtb_H37Rv_ETHZ
Mtb_H37Rv_OGE24
ORGANISM(S): Mycobacterium Tuberculosis 
2013-12-31 | PAe003619 | PeptideAtlas
ProteomicsMbov_BCG_ETHZ
M. bovis BCG (the vaccine strain for M. tuberculosis) from ETH Zurich.
ORGANISM(S): Mycobacterium Tuberculosis 
2013-12-31 | PAe001580 | PeptideAtlas
ProteomicsGenome-wide base editor screen identifies regulators of protein abundance in yeast
Proteins are key molecular players in a cell, and their abundance is extensively regulated not just at the level of gene expression but also post-transcriptionally. Here, we describe a genetic screen in yeast that enables systematic characterization of how protein abundance regulation is encoded in ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-11-07 | PXD029363 | Pride
Lc-msms Yeast 
ProteomicsMycobacterium tuberculosis under nitric oxide stress
To study the entire transcriptional and translational M. tuberculosis response from initial survival to eventual escape from nitric oxide (NO) stress, we exposed exponentially growing M. tuberculosis to 1 mM diethylenetriamine/nitric oxide (DETA/NO) and followed the adaptive response over 48 hours. ...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2017-08-17 | PXD006039 | Pride
Shotgun proteomics Mycobacterium tuberculosis Orbitrap Data-dependent acquisition 
ProteomicsM.tuberculosis - Whole organism, Pepxml, SC (Cortes,cell_rep,2013)
abundance based on Spectral counting, pepxml, Interaction consistency score: 5.2, Coverage: 36
ORGANISM(S): 83332 
2013-00-00 | 853879106 | PAXDB
ProteomicsPASS00289 - OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data:SWATH-MS Gold Standard (SGS) Dataset, S. pyogenes Dataset
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data:SWATH-MS Gold Standard (SGS) Dataset, S. pyogenes Dataset
ORGANISM(S): Streptococcus Pyogenes (ncbitaxon:1314) Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) 
2017-12-19 | MSV000081829 | MassIVE
ProteomicsBuilding high-quality assay libraries for targeted analysis of SWATH MS data
Targeted proteomics by selected/multiple reaction monitoring or, on a larger scale, by SWATH MS relies on spectral reference libraries for peptide identification. Quality and coverage of these libraries are therefore of critical importance. Here we present a detailed protocol that has been successfu...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2018-06-26 | MSV000082506 | MassIVE
ProteomicsFrom coarse to fine: The absolute Escherichia coli proteome under diverse growth conditions
Accurate measurements of cellular protein concentrations are invaluable to quantitative studies of gene expression and physiology in living cells. Here, we developed a versatile mass spectrometric workflow based on data-independent acquisition proteomics (DIA/SWATH) together with a novel protein inf...
ORGANISM(S): Escherichia Coli 
2022-01-12 | PXD017258 | panorama
ProteomicsM.tuberculosis - Whole organism, absolute concentration (Schubertetal,cellhostmicrobe2014)
abundance based on absolute concentration, Interaction consistency score: 1.0, Coverage: 46
ORGANISM(S): 83332 
2014-00-00 | 2118471723 | PAXDB
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