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TranscriptomicsChromatin immunoprecipitation of yeast to identify genes whose distribution of TBP and Sua7 was consistent with TFIIB (Sua7) mediated gene looping
ChIP-chip analysis of TBP and Sua7 was performed to identify genes whose distribution of TBP and Sua7 was consistent with TFIIB (Sua7) mediated gene looping. Two biological replicates were performed for each factor and the mock IP control.
ORGANISM(S): Saccharomyces cerevisiae 
2009-03-03 | E-MEXP-1584 | biostudies-arrayexpress
TranscriptomicsChromatin immunopreciptitation of Drosophila DNA using antibodies against RMA polymerase II CTD repeats
Crosslinked chromatin from wild type flies was sonicated into small fragments, and used in ChIP reactions using a monoclonal antibody, 8WG16, against RNA polymerase II CTD repeats. Input material was removed prior to chIP, and a control chIP was incubated with normal rabbit IgG. The Input and IPed...
ORGANISM(S): Drosophila melanogaster 
2008-05-20 | E-MEXP-1520 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Drosophila DNA to identify nucleosomes bound by RNA polymerase II
Crosslinked chromatin was digested with Micrococcal nuclease and immunopurified for Rpb3, a subunit of RNA Polyermase II. chIP'd DNA was hybridized to Drosophila tiling arrays and nucleosomes that were bound by Pol II were mapped.
ORGANISM(S): Drosophila melanogaster 
2008-05-20 | E-MEXP-1515 | biostudies-arrayexpress
TranscriptomicsMapping of mononucleosomal DNA in wild type Drosophila
Crosslinked chromatin from wild-type flies was digested with micrococcal nuclease. Mononucleosomal DNA was gel-purified and hybridized to Affymetrix tiling arrays.
ORGANISM(S): Drosophila melanogaster 
2008-05-20 | E-MEXP-1519 | biostudies-arrayexpress
Genomicsena-DATASET-SGL-15-10-2012-16:36:28:919-5 - samples
This dataset contain the raw files generated for SAIF genome project
EGAD00001000254 | EGA
Genomicsena-DATASET-SGL-04-10-2012-02:36:03:619-3 - samples
This is the bam file generated after alignment using BWA program for the SAIF genome
EGAD00001000249 | EGA
GenomicsSequencing and analysis of a South Asian-Indian personal genome
India with over 1.3 billion people is estimated to carry three times more genetic diversity compared to Europe. Next-generation sequencing technologies have facilitated the understanding of diversity by enabling whole genome sequencing at greater speed and lower cost. While multiple genomes from p...
EGAS00001000328 | EGA
GenomicsSGDAC- SciGenom Data Access Committee
Data Access Committee EGAC00001000077
EGAC00001000077 | EGA
GenomicsGenome-wide maps of epigenetic features in G1E model and in mouse primary erythroblasts.
Interplays among lineage specific nuclear proteins, chromatin modifying enzymes and the basal transcription machinery govern cellular differentiation, but their dynamics of actions and coordination with transcriptional control are not fully understood. Alterations in chromatin structure appear to es...
ORGANISM(S): Mus musculus 
2011-07-05 | E-GEOD-30142 | biostudies-arrayexpress
ProteomicsPancreatic beta cell proteome with increased proliferation in NOD mice
We investigated the pancreatic beta cell proteome changes in NOD-LIRKO vesus NOD where beta cell mass was enhanced early in life. Proteomics data is derived from FACS-sorted beta cells at 8 weeks and 12 weeks.
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2019-03-14 | MSV000083576 | MassIVE
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