Scott Andrew A - OmicsDI

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Genomics (92)
Unknown (66)
Transcriptomics (54)
Proteomics (18)
Genomic (4)
Models (2)
Metabolomics (2)

Organisms

Homo sapiens (119)
Mus musculus (18)
Rattus norvegicus (3)
Fundulus grandis (2)
Macaca mulatta (2)
Zea mays (2)
Caenorhabditis elegans (2)
Arabidopsis thaliana (2)
Listeria monocytogenes (1)
Campylobacter jejuni (1)
Hordeum vulgare (1)
Oryctolagus cuniculus (1)
Bos taurus (1)

Repository

EGA (87)
biostudies-arrayexpress (59)
pride (8)
PAXDB (6)
dbGaP (4)
MassIVE (3)
BioModels (2)
MetaboLights (2)
PanoramaPublic (1)

Tissue

Blood (5)
Blood cell (3)
B cell (2)
Neutrophil (1)
Primary cell (1)
Stem cell (1)
Thyroid gland (1)

Disease

Chronic myeloid leukemia (4)
Acute leukemia (1)

Technology Type

Mass Spectrometry (8)
Shotgun proteomics (8)
Mass spectrometry (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2000, ILLUMINA (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500 (ILLUMINA), AB SOLiD System (ABI_SOLID) (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Thermo Scientific Velos Pro mass spectrometer modified to enable 351 nm UVPD (2)
Ilumina HiScan H166 (1)
10X Genomics Chromium (1)
Illumina iScan (1)
MinION (1)
LTQ Orbitrap Velos (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2014 (12)
2016 (8)
2013 (7)
2008 (7)
2012 (6)
2006 (6)
2015 (5)
2010 (5)
2011 (4)
2009 (4)
2025 (3)
2022 (3)
2024 (2)
2020 (2)
2021 (1)
2019 (1)
2018 (1)
2007 (1)
2004 (1)
2017 (1)

UNIPROT ID/AC

10090.ENSMUSP00000048857 (6)
10090.ENSMUSP00000079727 (6)
10090.ENSMUSP00000080088 (6)
10090.ENSMUSP00000083973 (6)
10090.ENSMUSP00000088281 (6)
10090.ENSMUSP00000088285 (6)
10090.ENSMUSP00000089293 (6)
10090.ENSMUSP00000089300 (6)
10090.ENSMUSP00000089335 (6)
10090.ENSMUSP00000089339 (6)
10090.ENSMUSP00000089345 (6)
10090.ENSMUSP00000089346 (6)
10090.ENSMUSP00000090897 (6)
10090.ENSMUSP00000095287 (6)
10090.ENSMUSP00000095794 (6)
10090.ENSMUSP00000100034 (6)
10090.ENSMUSP00000100581 (6)
10090.ENSMUSP00000100738 (6)
10090.ENSMUSP00000105709 (6)
10090.ENSMUSP00000113068 (6)
10090.ENSMUSP00000123410 (6)
10090.ENSMUSP00000124509 (6)
10090.ENSMUSP00000136358 (6)
1433E_MOUSE (6)
2AAA_MOUSE (6)
3HIDH_MOUSE (6)
6PGL_MOUSE (6)
A1AT1_MOUSE (6)
AATC_MOUSE (6)
AATM_MOUSE (6)

CHEBI ID

CHEBI:15422 (1)
CHEBI:15713 (1)
CHEBI:15996 (1)
CHEBI:16027 (1)
CHEBI:16695 (1)
CHEBI:16742 (1)
CHEBI:16761 (1)
CHEBI:17202 (1)
CHEBI:17677 (1)
CHEBI:18077 (1)
CHEBI:2129 (1)
CHEBI:30769 (1)
CHEBI:40101 (1)
CHEBI:40154 (1)
CHEBI:45394 (1)
CHEBI:57429 (1)
CHEBI:58115 (1)
CHEBI:60377 (1)
CHEBI:60761 (1)
CHEBI:80961 (1)

Metabolite Name

(2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate (1)
5FU (1)
5FUMP (1)
ADP (1)
AMP (1)
ATP (1)
CMP (1)
CTP (1)
Citric acid-1,5-13C2 (1)
DTTP (1)
FUTP (1)
FUrd (1)
FdUMP (1)
Floxuridine (1)
GMP (1)
GTP (1)
IMP (1)
Orotic acid (1)
TMP (1)
UMP (1)
UTP (1)
UTP_C13 (1)

IsPrivate

False (2)

Modelling Approach

Delayed differential equation model (1)
Ordinary differential equation model (1)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (4)
Methylation profiling by array (3)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
RNAi profiling by array (1)
Genotyping by array (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (13)
2014 (12)
2022 (9)
2024 (7)
2013 (7)
2012 (7)
2010 (7)
2008 (7)
2025 (6)
2020 (6)
2018 (6)
2015 (6)
2023 (6)
2019 (5)
2009 (5)
2016 (5)
2011 (4)
2017 (3)
2007 (2)
2004 (1)
2026 (1)

Lab affiliation

Vice Dean, Faculty of Medical and Human Sciences Section Lead, Infrastructure and Technology, Manchester Academic Health Science Centre University of Manchester Wolfson Molecular Imaging Centre Manchester M20 3LJ (4)
Department of Medicine, University of Cambridge, Cambridge, UK (1)
Faculty of medical and human sciences, institute cancer studies (1)
School of Life Sciences, Queen’s Medical Centre, University of Nottingham, Nottingham NG7 2UH, UK (1)
University of Edinburgh (1)

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Role of a GntR-family response regulator LbrA in Listeria monocytogenes biofilm formation

The formation of Listeria monocytogenes biofilms contributes to persistent contamination in food processing facilities. A microarray comparison of L. monocytogenes between the transcriptome of the strong biofilm forming strain (Bfms) Scott A and the weak biofilm forming (Bfmw) strain F2365 was condu...

ORGANISM(S): Listeria monocytogenes

2012-09-06 | E-GEOD-40598 | biostudies-arrayexpress

Chemotherapy Modulation by a Cancer-Associated Microbiota Metabolite (Targeted metabolomics - 2methylisocitrate)

Understanding how the microbiota produces regulatory metabolites is of significance for cancer and cancer therapy. Using a host-microbe-drug-nutrient 4-way screening approach, we evaluated the role of nutrition at the molecular level in the context of 5-fluorouracil toxicity. Notably, our screens...

2025-09-16 | MTBLS9994 | MetaboLights

Chemotherapy Modulation by a Cancer-Associated Microbiota Metabolite (Targeted metabolomics - fluoronucleotides)

2025-09-16 | MTBLS9991 | MetaboLights

Phase I Imaging and Pharmacodynamic Trial of CS-1008 in Patients With Metastatic Colorectal Cancer.

Not available

S-EPMC4881374 | biostudies-literature

Dhawan2019 - Endogenous miRNA sponges mediate the generation of oscillatory dynamics for a non-coding RNA network

This is a delay differential equation model showing how non-coding RNA, acting as microRNA (miRNA) sponges in a conserved RNA-transcription factor feedback motif, can five rise to oscillatory behaviour.

2024-09-02 | BIOMD0000000841 | BioModels

Dolan2014 - calcium homeostasis (SOCE)

No description

2014-09-15 | MODEL1405070000 | BioModels

Facilitators and barriers to the implementation of the Primary Care Asthma Paediatric Pathway: a qualitative analysis.

Not available

S-EPMC9109122 | biostudies-literature

Transcription profiling of mouse bipotential embryonic liver cells to identify liver progenitor cell surface markers (430)

The ability to purify to homogeneity a population of hepatic progenitor cells from adult liver is critical for their characterization prior to any therapeutic application. As a step in this direction, we have utilized gene profiling of a bipotential liver cell line from dpc 14 mouse embryonic liver...

ORGANISM(S): Mus musculus

2008-06-15 | E-GEOD-6957 | biostudies-arrayexpress

Transcription profiling of mouse bipotential embryonic liver cells to identify liver progenitor cell surface markers (430A)