Scott Thomas T - OmicsDI

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Unknown (763)
Genomics (72)
Transcriptomics (30)
Proteomics (15)
Metabolomics (11)
Multiomics (3)
Genomic (1)
Other (1)

Organisms

Homo sapiens (87)
Mus musculus (16)
Saccharomyces cerevisiae (2)
Rattus norvegicus (2)
Streptococcus pneumoniae (1)
Canis lupus familiaris (1)
Escherichia coli (1)
Coxiella burnetii Dugway 5J108-111 (1)

Repository

EGA (70)
biostudies-arrayexpress (33)
MetaboLights (9)
pride (7)
PAXDB (6)
GNPS (2)
MassIVE (2)
dbGaP (1)
jPOST (1)

Tissue

Epithelial cell (1)
Islet of Langerhans (1)
Leukocyte (1)
Lymph node (1)
Pancreas (1)
Pancreatic adenocarcinoma cell line (1)
Stromal cell (1)
Whole body (1)

Disease

Lymphoma (1)
Malignant neoplasm of ovary (1)
Pancreatic cancer (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass spectrometry (9)
Mass Spectrometry (7)
Shotgun proteomics (6)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500 (1)
Illumina MiSeq (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Bruker maXis ESI Quadrupole TOF (2)
Liquid Chromatography MS - negative - direct infusion (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq 4000 (1)
6545 Q-TOF LC/MS (1)
Q Exactive (1)
5975C Series GC/MSD (Agilent) (1)
Diode array detection MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2006 (8)
2014 (7)
2021 (7)
2010 (5)
2023 (5)
2019 (4)
2013 (4)
2015 (3)
2009 (3)
2012 (2)
2011 (2)
2008 (2)
2024 (2)
2020 (1)
2016 (1)
2007 (1)
2022 (1)
2018 (1)
2025 (1)

UNIPROT ID/AC

10090.ENSMUSP00000048857 (6)
10090.ENSMUSP00000079727 (6)
10090.ENSMUSP00000080088 (6)
10090.ENSMUSP00000083973 (6)
10090.ENSMUSP00000088281 (6)
10090.ENSMUSP00000088285 (6)
10090.ENSMUSP00000089293 (6)
10090.ENSMUSP00000089300 (6)
10090.ENSMUSP00000089335 (6)
10090.ENSMUSP00000089339 (6)
10090.ENSMUSP00000089345 (6)
10090.ENSMUSP00000089346 (6)
10090.ENSMUSP00000090897 (6)
10090.ENSMUSP00000095287 (6)
10090.ENSMUSP00000095794 (6)
10090.ENSMUSP00000100034 (6)
10090.ENSMUSP00000100581 (6)
10090.ENSMUSP00000100738 (6)
10090.ENSMUSP00000105709 (6)
10090.ENSMUSP00000113068 (6)
10090.ENSMUSP00000123410 (6)
10090.ENSMUSP00000124509 (6)
10090.ENSMUSP00000136358 (6)
1433E_MOUSE (6)
2AAA_MOUSE (6)
3HIDH_MOUSE (6)
6PGL_MOUSE (6)
A1AT1_MOUSE (6)
AATC_MOUSE (6)
AATM_MOUSE (6)

CHEBI ID

CHEBI:17368 (3)
CHEBI:15971 (2)
CHEBI:16119 (2)
CHEBI:16750 (2)
CHEBI:17596 (2)
CHEBI:17687 (2)
CHEBI:102265 (1)
CHEBI:1156 (1)
CHEBI:133316 (1)
CHEBI:133365 (1)
CHEBI:138560 (1)
CHEBI:138872 (1)
CHEBI:15347 (1)
CHEBI:15366 (1)
CHEBI:15402 (1)
CHEBI:15414 (1)
CHEBI:15424 (1)
CHEBI:15428 (1)
CHEBI:15435 (1)
CHEBI:15596 (1)
CHEBI:15603 (1)
CHEBI:15610 (1)
CHEBI:15627 (1)
CHEBI:15699 (1)
CHEBI:15725 (1)
CHEBI:15727 (1)
CHEBI:15753 (1)
CHEBI:15754 (1)
CHEBI:15756 (1)
CHEBI:15793 (1)

Metabolite Name

Accurate mass (2)
Hypoxanthine (2)
(+)-Neomenthol (1)
(-)-Medicocarpin (1)
(10S)-Juvenile hormone III acid diol (1)
(10S)-Juvenile hormone III diol (1)
(1R)-Hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene (1)
(1R,2S)-Naphthalene 1,2-oxide (1)
(2-Naphthyl)methanol (1)
(22R,23R)-22,23-Dihydroxy-campest-4-en-3-one (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(2S,3S)-3-Methylphenylalanine (1)
(3R,2'S)-Myxol 2'-alpha-L-fucoside (1)
(3S,2'S)-4-Ketomyxol 2'-alpha-L-fucoside (1)
(4E)-2-Oxohexenoic acid (1)
(9Z)-Hexadecenoic acid (1)
(9Z)-Octadecenoic acid (1)
(Indol-3-yl)acetamide (1)
(R)-(Homo)2-citrate (1)
(R)-10-Hydroxystearate (1)
(R)-Mandelamide (1)
(R)-Mandelate (1)
(S)-DNPA (1)
(S)-Malate (1)
(Z)-3-Hexen-1-ol acetate (1)
(Z)-3-Peroxyaminoacrylate (1)
1,1'-Dihydroxy-1,1',2,2'-tetrahydrolycopene (1)
1,2-Dihydronaphthalene-1,2-diol (1)
1,2-Dihydroxy-8-methylnaphthalene (1)
1,3-Diaminopropane (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (5)
ChIP-seq (2)
Transcription profiling by SAGE (1)
ChIP-chip by array (1)
ATAC-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (101)
2022 (98)
2023 (89)
2024 (68)
2020 (62)
2025 (48)
2019 (43)
2018 (42)
2015 (41)
2014 (37)
2017 (32)
2016 (26)
2013 (24)
2012 (18)
2010 (15)
2009 (14)
2011 (13)
2008 (9)
2026 (9)
2004 (3)
2006 (2)
2007 (1)
2002 (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (1)
Department of Pharmaceutical Sciences, University of Colorado - Anschutz Medical Campus, Aurora, CO, USA (1)
GlaxoSmithKline (GSK) (1)
Infection Program, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia (1)
Infection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, VIC 3800, Australia (1)
Marshall Centre for Infectious Disease Research and Training, School of Biomedical Sciences, The University of Western Australia, Nedlands, Western Australia, 6009, Australia (1)
Sir Peter MacCallum Department of Oncology, Peter MacCallum Cancer Centre, The University of Melbourne, Victoria 3000, Australia (1)

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NOD Mouse Islet Peptide Content Identification

Beta-cells produce hybrid insulin peptides (HIPs) by linking insulin fragments to other peptides through peptide bonds. HIPs have unique amino acid sequences and are targeted by autoreactive T cells in type 1 diabetes (T1D). Individuals with recent-onset T1D have significantly higher levels of HIP-r...

ORGANISM(S): Mus musculus (Mouse)

2023-11-16 | PXD041616 | Pride

Highly abundant core taxa in the blow within and across captive bottlenose dolphins provide evidence for a temporally stable airway microbiota.

Not available

S-EPMC7796641 | biostudies-literature

TRBC1-CAR T cell therapy in peripheral T cell lymphoma: a phase 1/2 trial.

Not available

S-EPMC11750712 | biostudies-literature

Anti-CD40 Antibodies Fused to CD40 Ligand Have Superagonist Properties.

Not available

S-EPMC8490940 | biostudies-literature

Langerhans cells drive Tfh and B cell responses independent of canonical cytokine signals.

Not available

S-EPMC12315773 | biostudies-literature

T cell mediated immunity after combination therapy with intralesional PV-10 and blockade of the PD-1/PD-L1 pathway in a murine melanoma model.

Not available

S-EPMC5918896 | biostudies-literature

Real world long-term impact of intensive treatment on disease activity, disability and health-related quality of life in rheumatoid arthritis.

Not available

S-EPMC6390620 | biostudies-literature

Langerhans Cells Drive Tfh and B Cell Responses Independent of Canonical Cytokine Signals.

Not available

S-EPMC11760737 | biostudies-literature

Anti-tumor efficacy of plasmid encoding emm55 in a murine melanoma model.

Not available

S-EPMC7680263 | biostudies-literature

Basal Gene Expression Measurements in HEK293T Cells

Gene expression microarray profile for human embryonic kidney cells (HEK293T, CRL-11268) under untreated conditions. Gene expression microarray profile for human embryonic kidney cells (HEK293T, CRL-11268) under untreated conditions (DMEM, 10% FBS).

ORGANISM(S): Homo sapiens

2010-04-12 | E-GEOD-21092 | biostudies-arrayexpress

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894 Results

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OmicsDI is part of the ELIXIR infrastructure

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